Protein Info for mRNA_8282 in Rhodosporidium toruloides IFO0880

Name: 16650
Annotation: K11359 SPT7 transcriptional activator SPT7

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 884 PF00439: Bromodomain" amino acids 61 to 140 (80 residues), 61.6 bits, see alignment E=6.3e-21 PF07524: Bromo_TP" amino acids 587 to 656 (70 residues), 29.5 bits, see alignment E=6.1e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (884 amino acids)

>mRNA_8282 K11359 SPT7 transcriptional activator SPT7 (Rhodosporidium toruloides IFO0880)
MKYLFAAIDARKARAREESGGVANGRVGRTRYSADELKRLVVEASEAVDDKSAANEFQET
LERIVNEIKNTTEHSGPFLQKVRKADVPDYYDVIKRPMDLATLLKKVKQQLYRTKKAFAE
DLDLIWSNCLLYNSHPSHPLRHSAEVLRAKSNQLLEFITDPTLSQRSLLAAHMSSAALDA
RRAGSTRVGTPDEDADADAESDDEPARHKRALSERFLNGINGDTPRDSSASPAPSRSATP
GIARRLSRKFSAGPLGRVSPSPEPTPPPPAGLPFEEQPAFVRTPQAMDEFLLLDRELSKL
EGSGFKPTKSTASALLPPSAFELASSTVIATKSKRKTHKEHIADLVHRLNPDLLPKPPAE
PASSAETSPAVSTPAAPSESRCQPTQPLEAVWWDIVGPAPSSSALIPAPSASSAINGING
HAADSSAPPAPSAVPALAAGMPHVPWVGYSATPFATSTGSRAGPGMDAKGKGKQRAGEVA
VRANGAPKQVVRRKEAEVGLAPKMRRNCETWRRIRRVGAVLARESTTADLESPVVSSDES
DTDLPPVNGMDVDGARPAKRRRRSRPMLSAISVPRRALACPATAPVAAREALRSFAGGML
AHSGFEGANAGALDVLGHVAGEYLANMARTLRFYSDRYGADMSDKRILVHALGENGVPSP
AHLQAYVSEDVDRYGSRLSDLLAKLERARREQLDSLTAEDDARAEDADEALFADDGEAFV
AGDFATRIGEDFFGLAEQGLDQELSVSSLVLPKWILRGEPRPLDSASTSSLAYSPPPAFV
PLTPDAVSSQIGLVRPYLSHRAARPDLGLADEAGHLSGTSSRSKTGVRHKVPPHGRIPFK
GKRRPDDPTMPAAIAAQLAGANEPKKKKKKVAQVEEAVVESGGE