Protein Info for mRNA_8285 in Rhodosporidium toruloides IFO0880

Name: 16653
Annotation: HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1357 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1357 amino acids)

>mRNA_8285 HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729 (Rhodosporidium toruloides IFO0880)
MAAPVAAVAALTPPRPASVYSTRSPAAARTLDSSSAPRPASVVIAGVCGAEGGAEAIAAR
RRNSGSFKHMSTGGLVSNSPFQKLAGGSPTKAANPGLGLYNTSRIPTSAAQGGPGRRTSG
SRRASGDQDGPVKENSNPSELNELALGRKKSSDSLARSRSSSPGAPLMPVRQATAATSSM
TAPLSSSPFKPTRPAFGSASRNPQPPLDDIPRRQTSSFAALRQNNLVSSSPFTSKSATAP
SPELQQAPYEIEPLTRESAPSAYYELSHDDASPQLASSAKMNGQMGLGARPGPALASAGG
RIIAGSSVPPPNTPPRERHYSSEASPSSSLRSPGGSALAQTRRGMRGPRPISGGYDDGDE
TEREDIGRTVRRQPSSKSVAWAETEEVFEFEVEDERRRSGLSDASTLSDEGRYYGHDSSD
EESDSPQYTHQPDGSFTYEEGGSVEVHDVEVGSDADESVVSSASSAMDEVIGQIDEYLHE
ESEAFDETDVFSPSQIPSFTDQPDLPSHHDTSGYSSPNIPQAPASAFSVSTESGADDCAS
EVMSASSYDDDEEDQQDAHFTATKEAILSRGRASLPDAPGSPGRPPLPPAPISLAAKTLA
PQQPSVPSLVKSKSQFSLPDIPGTSPFLGFEDDGAAQSVVTLDGEAQPLSLPATKPLQPR
PHDSASKTAPAIAPAALGSPFTLNADRTAEATTPASRVEASPVLSRKASLVGSDVTTSSV
SWYGSSVNGSLRGGTIRLGRDRLEERMKAHQALFGDSSPLPSFGAFPSAAKTTNPSTSQP
STAPADSRAIEAQAAPKARSATLSSNMMPTIAASPQRGQLGVSVGSPLTAEVAEEMQSPL
ERLQRGMKGRQGGEWRSGDSLLGVAEVAEGDDDVPHLAPLKSGRPTRRRSRSTGDASIAE
TSSTALQAQLTMPELGFERKAGDAGFGSSVLESLDDIYNSRNRTYRVRESKQLVVVSDFT
GSRAGDVDPGRAWRKKRPSDVHAINRSLSTMSVNSQSVRKSREYVGQLFVLLRDVSFEGM
PMPRQRVSVTATLDNGRQKVDAAVRELSSKVSLKKEFELICNQDLAFSIHFSVPRPPPSS
TPTMPSAPSPAPTPPASPSKTHRALRLFSSPKKKPTPTKAPTAPPPTPDPFFDYVSSDGQ
LATARVTFASEAGKCRLKKSRILVPFVSKSSSSPRSCSGALTVDLLFVPAVSGVPKANLP
KSMDEVLEGLELAEWATKITHEGVLTQLGGDTTVWRRRIVKLRGSTLVPYSEVTKRSHVE
INLALVSQIEDLNVATVQSPKSRASRFEDEDEDLSRMDNSFRLIFKYGNRIDFYADSPEA
KSTWLSVLSVVVGKEDGKKAPPEWAVAVRKLPPPKSY