Protein Info for mRNA_8286 in Rhodosporidium toruloides IFO0880

Name: 16654
Annotation: HMMPfam-GATA zinc finger-PF00320,ProSiteProfiles-GATA-type zinc finger domain profile.-PS50114,SMART-zinc finger binding to DNA consensus sequence [AT]GATA[AG]-SM00401,SUPERFAMILY--SSF57716

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1261 PF00320: GATA" amino acids 575 to 611 (37 residues), 30.1 bits, see alignment (E = 1.5e-11)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1261 amino acids)

>mRNA_8286 HMMPfam-GATA zinc finger-PF00320,ProSiteProfiles-GATA-type zinc finger domain profile.-PS50114,SMART-zinc finger binding to DNA consensus sequence [AT]GATA[AG]-SM00401,SUPERFAMILY--SSF57716 (Rhodosporidium toruloides IFO0880)
MSLVLPKPARQSSSDQHARREMQAQAGGSMGQGPAGAAESRRANGKGVNRRKGKGKGRMM
MIKIFYALNSPRFPSSSAPTPSTSSHLLPASTPSSDFLSVLDPSLAPSPSSQSPAPPTPA
APSPSETNYSCMARLSAPVWVQVIGGSSGARRADSAEVQQQQFGRVTLKTCLSAICISRP
ELVIDSTKDFSVSAVDPYESSHRRQPPSGPSTSSTSFDSSNDSSSARPGEGLVEGKGMLS
WTLAEKKEGTTMVVGRIVGSVEDRRSKRRKGEDGGFAMEMSEGESDADEPEETLEVWLQL
TERDAFTQGQFLDCLRSYHNPVQHLQSEMSDFASSPPKRRESALFASTSSSLPPARPAPA
APVPSGDPIKRKRPRETPSLPIPPVAASVPPAPFATGASSPASFLPPPPAALATNDANLA
GLQDPRTLALLGQILPSLTAAGADASGLLTALTQQHQQSQQQSQQEALLPAIQTLAKFCG
INLPPQQQQVMPTEPLLTSTAADASSHWQSDLPRPPTGAPPTSTATATTSRKPKSGSTSS
SSNREHFAAIDLTSLSASHAQAVGKQNPRDPQSGCANCKRRKSTTWREGKGPDGKLMSVC
NACGTFYNKNGYHRTKQPAGSTASATSPPLSTSALPSTSTKTAGRPLQGRLTATCEADLV
KRKSKKQKTGSSSTNQAGLIPPLSPSKQIGPRSPALNFSFSPSRAGGRSAGAAFAGIVSS
PGKSPRMRYRQANGTAATSPVRGPSRPSKGDGAMYNSDGEDSASNPFAFGGLFSLTNRSP
SPTRAELPRPPRNSGGKGQAGMPSYLLTASPGTALDRVLSETNIGSIGGIVNEQAGQAES
MQLDQASTVPDEFNFFLQPGSPTLGKENARPNAAGKVKTATTSTDAPTTDVDSFESVLSS
LRRNFDARLSSNALTAPSSPAPSSPCVLPRTSTATPGSKGKAPQSCGRPPPSILDSFIDG
LVPAFALDSNAGGGAVMGTGRTPASDSDAWSPDNAAQRDEDQTVTLDSFAASKSLGQHDL
PQDQASRTTRPSHAPTSSFDFSNGGPSKTANRRAAFIPAHLLAPSDATEFDFGSLPPSSP
PLLPSEAFPTPSDFDGITPSADGGDADDRESRQQQGAGTLTIEAVAETVAREPNVDTRNA
MISLLQSLGASSTGSEQVQLPGVGADTVQLDRDTVNKLLSLISASSQDGSTAGPVSQAAS
SAAPGAAADSYTMQDESTDYSKLDLFGTLDAGSSAMAGAPPIEEGQSGQMQDLFRDLFDR
F