Protein Info for mRNA_8287 in Rhodosporidium toruloides IFO0880

Name: 16655
Annotation: K10245 ELO2 fatty acid elongase 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 460 transmembrane" amino acids 208 to 226 (19 residues), see Phobius details amino acids 238 to 257 (20 residues), see Phobius details amino acids 288 to 306 (19 residues), see Phobius details amino acids 313 to 330 (18 residues), see Phobius details amino acids 336 to 356 (21 residues), see Phobius details amino acids 375 to 394 (20 residues), see Phobius details amino acids 414 to 433 (20 residues), see Phobius details PF01151: ELO" amino acids 208 to 443 (236 residues), 202.6 bits, see alignment E=4.1e-64

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (460 amino acids)

>mRNA_8287 K10245 ELO2 fatty acid elongase 2 (Rhodosporidium toruloides IFO0880)
MRALGLERDSAGRCSEGLHFPPFPRLDASLPARLWSWRASRGRLLSPRSPVQQVDTRSSY
RAITVSRRSNHCLAASERSVVQLVTFSTPCGLASLASRALLDLAGQCCRCERNADPSEAR
RERASVQGTCLATSALAPPDARSSLAVSLPPSPCTQATLSTRSGPFTMVAPSPGPVYSLL
HALPIPSLPRTIEHWIPGQTPLSTTPEVVIAVAVYLAVIFGGQALMRGSKPYRFKPLFML
HNFLLSTGSGLLLALMLEEIVPIIWKHGLFHAICANEAWTPRLETYYIFNYYFKYWELFD
TVFLVVKKKPLQFLHVFHHTATAVLCYTQLNGRTSVSWVVITLNLFVHVLMYYYYFMTAA
GYKIWWKKYLTTLQITQFVIDLFTVYFASYSYFAWTYARGSLPTLGSCAGTEGAAIFGCA
LLTSYLFLFIAFYQRTYKKAGQNKVDAAKGAAATVAKKTN