Protein Info for mRNA_8291 in Rhodosporidium toruloides IFO0880

Name: 16659
Annotation: K00851 E2.7.1.12, gntK, idnK gluconokinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF01202: SKI" amino acids 14 to 56 (43 residues), 26.3 bits, see alignment 3.8e-10

Best Hits

Predicted SEED Role

"Gluconokinase (EC 2.7.1.12)" in subsystem D-gluconate and ketogluconates metabolism or Entner-Doudoroff Pathway (EC 2.7.1.12)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.7.1.12

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (255 amino acids)

>mRNA_8291 K00851 E2.7.1.12, gntK, idnK gluconokinase (Rhodosporidium toruloides IFO0880)
MAPLPALIIVMGASGCGKSTVGLGVATALGVPFVDGDDLHPAASVAKMSAGNPLTDEDRI
PWLHKIRETAILLTSPEGLAALDRPAAPPSPSEVDSAALSHELHAAISRIQAPSLNARLE
LRQRGEKREREAVVVACSALTVQYRNLLRGEEARFVLPNGKEITADKHLDPHIETFFIYL
QGTRPLLLNRMEHRAGHFMKASMLDSQLATLQEPHETDEVNVAVVKLGQGEGEAEERGKE
AVIADAVARTRRFVG