Protein Info for mRNA_8296 in Rhodosporidium toruloides IFO0880

Name: 16664
Annotation: K19951 TBC1D8_9 TBC1 domain family member 8/9

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1015 transmembrane" amino acids 94 to 112 (19 residues), see Phobius details amino acids 415 to 439 (25 residues), see Phobius details PF02893: GRAM" amino acids 20 to 90 (71 residues), 30.5 bits, see alignment 4.3e-11 PF00566: RabGAP-TBC" amino acids 258 to 461 (204 residues), 162.5 bits, see alignment E=1.8e-51

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1015 amino acids)

>mRNA_8296 K19951 TBC1D8_9 TBC1 domain family member 8/9 (Rhodosporidium toruloides IFO0880)
MSLRTHQRKSYWRDPTKEDLFREAFGLPDEEQPLGEVHAVLAMAGHEDAYSGKLYLSTSY
LTFTSLDRRSCRLTLPLATVRRVEKLAPGQEGTAVGAFALGLTLFHGLQIIVQLNSLRPT
NDAFCANLRVRLKASLPLMKTLKPFANTFFSEWFLSPDREDEERRKKEEESKVAELISFD
EKGKGKEDGEPWTTESGIDGRFHAGLGMIFKYPGDPRKLREKSKMKLWRQYLQDYGRNLT
LIRYPSFTRLVLVGLPNRLRGEMWELTCGSMFMRLQNPGVYEQILKDNEGRRSASTDDIE
KDLHRSLPEYPAYQDVKGIDTMRRVLTAYAWSNPALGYCQAMNLVAASFLIYMSEEQCFW
CLSVLCDRLLPGYYSPSMYGTVLDQRVFEHLVQRCLPSLHDHFVQADIQLSVASLPWFLS
LYISSMPMVFAFRIIDCFFLMGPKVLFQVGLAILKLNGAALLETTDDGAFINVLKSFFVT
LGESAHPDSHDPRQRQVTKFQELFVVAFREFSIITDDTIASERKRFRSEVLVSIETFAKR
TAIRNLQTTGRLDPAQLGLAYDHFQLAVLQMKERERQDKAANGSRSRSSSTVGRSPAQSP
RPDGGASSLSSGSKPPKEETKPEDRLDRIAFGRFMADVATWARNEKLVKNGLLSHIEREP
ADHALIDKVFLAWDVTHAGSLSFQDVISGLDTVLFNDLMLNVSWLFSLYDADKDGYLTKD
EVLQVSEALLFIFRNEPGDRYLGSISNMLQNLFEYGESTKPPAKPQDGKQPADSPEIQST
EWADNDPNRPFLSHATFRMCILADALLEDFFDSDLTKSWRLEVLVPEEKPKPQTLAGGWW
GGLVSAIVTDENKERFNRLADEVGKRLDIQTVEQRPSIGKLDAAAAAIEPTARDSLFSTS
SNRKKAPLPPASDRSAVNPLSAAAMRMPAYPTQENPWADAASGKGELSSSAPKHDIDVQA
LAQQAMQRPQFAVDEATEGGEGEDMYGGEGEEGLLGQVDAMLQADDASRHDDDLL