Protein Info for mRNA_8302 in Rhodosporidium toruloides IFO0880

Name: 16670
Annotation: HMMPfam-Major Facilitator Superfamily-PF07690,SUPERFAMILY--SSF103473

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 528 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 44 to 64 (21 residues), see Phobius details amino acids 71 to 91 (21 residues), see Phobius details amino acids 102 to 126 (25 residues), see Phobius details amino acids 139 to 159 (21 residues), see Phobius details amino acids 171 to 193 (23 residues), see Phobius details amino acids 295 to 314 (20 residues), see Phobius details amino acids 335 to 357 (23 residues), see Phobius details amino acids 372 to 389 (18 residues), see Phobius details amino acids 401 to 423 (23 residues), see Phobius details amino acids 437 to 458 (22 residues), see Phobius details amino acids 498 to 518 (21 residues), see Phobius details PF06813: Nodulin-like" amino acids 8 to 194 (187 residues), 33.4 bits, see alignment E=3.6e-12 PF07690: MFS_1" amino acids 11 to 446 (436 residues), 71.3 bits, see alignment E=7.3e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (528 amino acids)

>mRNA_8302 HMMPfam-Major Facilitator Superfamily-PF07690,SUPERFAMILY--SSF103473 (Rhodosporidium toruloides IFO0880)
MLQRHVTLLFACVATLSAGTNYAISSYLPQLGSELHLSSVQQNIVSGAGNAGVYLSGPLV
GPLVDRKGPRLVLSLSALALLVGYLGQAVVYDGGYEGIYARVGLSGLAACQFAAGIGGSA
ALSASLKATSQSFSKSSRGAAMATVLSCFGLSAFFYSSLSHANLARSDDPTYGFLLTLAF
GCSISMFLGALFVRLPAMPVEPAPGTATPHGRGEYLAVSTSDDSDVPPRRDFALESDISL
RSDVVDEALPARPLSRRTGSSSPLLQDEAKSMRHSAGDLNVSGWDLLQESDFWRLFAYLA
LCSGIGLMYINNLGTVVTTLASPNEDPKSVARSQAHLVALLSVFNCAGRLLVGFLADTFT
HHAPERVRFARIWWLVATASGFAVSQVLAGQAERVEGLGGLALPTAVLGLAYGSLFGNMP
VVCLERFGGASFATNNGLLTMSPSLSAPFVNLLFGAVYDSHVSPDEPASIPSSSLVRRAG
SAPPAHLCTLGKECFATAFRATTFISLVALGLAIVLAFKRTFKPLYHQ