Protein Info for mRNA_8309 in Rhodosporidium toruloides IFO0880

Name: 16677
Annotation: K06965 PELO, DOM34, pelA protein pelota

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 PF03463: eRF1_1" amino acids 1 to 159 (159 residues), 166.3 bits, see alignment E=5.1e-53 TIGR00111: mRNA surveillance protein pelota" amino acids 107 to 403 (297 residues), 185 bits, see alignment E=1.2e-58 PF03464: eRF1_2" amino acids 167 to 301 (135 residues), 81.5 bits, see alignment E=1.1e-26 PF03465: eRF1_3" amino acids 304 to 403 (100 residues), 83.8 bits, see alignment E=1.9e-27

Best Hits

KEGG orthology group: K06965, protein pelota (inferred from 57% identity to uma:UM01561.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (433 amino acids)

>mRNA_8309 K06965 PELO, DOM34, pelA protein pelota (Rhodosporidium toruloides IFO0880)
MLLVRSNINKDQSGSVTLRPQDDEDMWHAYNLISKGDELRASAVRRVTSESATGSTSSQR
VHLKLTIQVDKVLYSALAQPDSTSTASSSSAADSSAPVAAASGTSGTTTLHISGKITSEN
EHVKKGAYHTLDLEIGRDFTIIKGEGEWDSVARERLREMTEPGRGADVGAVVCGEGTANI
CIITNHTTIVKQRIDVPVPRKRKGGGTALGAERANSRFLHQVYDAVNRHFDFEQLKVLII
ASPGFTKETVHSFLLEEAVRQNNKALIQAKSKFLLLHSPTHHVHSLTQILSSPEVSSQLK
DTKFAQEGVMLEKFFKMLEENPLRAWYGESHVFKAAERGAIGKLLVSDELFRSPSVARRK
KFVQLVEDVKAYGGEVLMFSSMHESGQQLNQLTGIAAILTYPLDIEVVEEEERAEREEEA
KRRREAGEEQDDE