Protein Info for mRNA_8310 in Rhodosporidium toruloides IFO0880

Name: 16678
Annotation: K18752 TNPO1, IPO2, KPNB2 transportin-1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 921 PF03810: IBN_N" amino acids 33 to 100 (68 residues), 38.7 bits, see alignment 2.6e-13 PF13513: HEAT_EZ" amino acids 434 to 484 (51 residues), 46.1 bits, see alignment 1.9e-15 PF02985: HEAT" amino acids 459 to 487 (29 residues), 17.7 bits, see alignment (E = 1.1e-06)

Best Hits

KEGG orthology group: None (inferred from 59% identity to uma:UM04397.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (921 amino acids)

>mRNA_8310 K18752 TNPO1, IPO2, KPNB2 transportin-1 (Rhodosporidium toruloides IFO0880)
MSSWTPSPEGLQELLSCLRSSGSPDTKVQQQTQERLESFNEIPGYNSYLVYILTQMPGED
VTVRSMAGLLLKNNIRMRLESFDPDVVAYVQANIFTAIGDSTSMIRNTVSTVIDTLLVEL
GPEKWTEGLSKLMELADSDNQLAQEGAFNALDKLCQDIPKRLEQLEVGGQRPLDYMIPKF
LTHIDSPYPKIRNFALSCAIQFISPDNNALTLHLEPFVVALFKHATDDSVDVRKTVCQAL
VQLLATRPDVLVPHMASVVEFMLYSTQDTTNEEVALEACEFWLTFAEDPELVNQLRPYLP
KVVPVLLQSMVYSEDDILLLDTEEDDAAVPDKASDIKPHLLSSKAHTNERLEDAEGANGQ
GGHMSRERAEDDEDEEEDDDDEYDEDEEAYTEWNLRKCSAAALDVMAVAFEAELLEVLLP
YLKEKLFSQDWLDRESGILALGAIAEGCITGIEPHLPILMKFLVNSLNDKKPLVRSIACW
TIGRYSSWTIKEDATAEHKQQYFVPAMEGLLRMCLDNNKRVQEAGCSAFATLEEEAGPEL
EPFLGSILSNLVYAFNKYQQKNLLILYDAIGTLADAVGSSLNNQAYIDILMPPLIAKWGA
LGDQDPDLIPLLECMSSVVIAIGPGFAQYAQPVFNRCISIVKQSLIEFQQYQQDPINYDE
PDKTFLIVSLDLLSGLTQGLNTAITQLYSQSDPPVLTLLSLCLQHPDAPVRQSSYALLGD
TAISCFPILKPTLAQFMPVLISHIDVEPRLAEVSVCNNAAWAAGEIALQAGSDMEQWVNP
LMERLVPILLSSKAARSLTENSAVTIGRLAIVCPQLVAPHLEVFVSAWCQALADIKDNEE
KDSAFRGICAAIQVNPNGISAAFGYFLNAVARWTRPSDQLNEMFKTILLAFKGMSEGPAW
DAQLAHLPPVIVQRLRERYGV