Protein Info for mRNA_8319 in Rhodosporidium toruloides IFO0880

Name: 16687
Annotation: HMMPfam-Protein of unknown function (DUF2370)-PF10176

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 546 transmembrane" amino acids 342 to 363 (22 residues), see Phobius details amino acids 375 to 388 (14 residues), see Phobius details amino acids 499 to 521 (23 residues), see Phobius details PF10176: DUF2370" amino acids 256 to 530 (275 residues), 230.6 bits, see alignment E=9.9e-73

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (546 amino acids)

>mRNA_8319 HMMPfam-Protein of unknown function (DUF2370)-PF10176 (Rhodosporidium toruloides IFO0880)
MAALFRLGQQHSLDRASYSSPAAHPDFDAFDAPSDNEDDDTGSHSLVRPGGSSGGARQSS
EGYSFDQPYSTDPLSSTSATPPAASASASSPRRSFSQTHSLPGGYDFEPQSEPLRPGNGA
PAGVAGGAPSIPLRTRPSVMRGDYSQSDSEGWSGRGYGQSEDANGASAGQAGSVGGWRGL
VARLRGQTSGSNGASNAAGESHGLLFSQDESDETDTDAPATSRPSTYPPQHAQTRNPLLP
LPARPPQFDPPSSSGATAGRVFGGGQSNDGVFANLAAKPDNPQGLDVVGEGPDKNEVLPP
YEAAQLDPSPAYWETTVITPGGPFSADDICVDGLPVGNLFSFAWNLLVSMSFQFVGFLLT
YILHTTHAAKNGSRAGLGITLIQLGFYIKQRTDHASDFPLDPSSPGDETGLNGSAGPSDF
DSQRWTWWGGFDDTPVESATATASGVFGSLPTQVTDALGNVLDASDPQATPTGLGMPSLQ
GDGLSIEEMGRMNQAANEWFAFALVTVGSFLLIGSCLAYWRAVRYARAMRRGQGPGADAE
NMVAVS