Protein Info for mRNA_8320 in Rhodosporidium toruloides IFO0880

Name: 16688
Annotation: KOG1516 Carboxylesterase and related proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 716 transmembrane" amino acids 92 to 111 (20 residues), see Phobius details PF00135: COesterase" amino acids 148 to 692 (545 residues), 239.3 bits, see alignment E=9.6e-75 PF07859: Abhydrolase_3" amino acids 328 to 364 (37 residues), 24.1 bits, see alignment 3.1e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (716 amino acids)

>mRNA_8320 KOG1516 Carboxylesterase and related proteins (Rhodosporidium toruloides IFO0880)
MRLPAFLRPAAGHLPLHSSNRSASRPMHVLGDSDDEDGAGGAYGRRDRDEATIPLTSLDP
DDPDSPSYPPSSSSKRLSSRSSSPLSRLPTRRILAILVVIVGLYKLARHAYAADYGRLQS
KLDEYSARYNPWHPQPIPIQWVDVEPVAAVKGRRYRAHKEREDDRYWGWKALPYAQPPLG
ERRFRVALPLEEAKGDETREQITDEWNEGCVRPRPREDRMDGEHEHFDGHEDCLKINVFS
PVQRPNNTLLPVMLWIHGGGFVGGSSGEEKYNPRGLMHRAIDMEQPFVFASINYRLGALG
LTASPPEPGPPPVAPHIPVQAPTDLDLNVAFKDQLQALRWIHEHIEQFGGDKDKVVMVGH
SAGAMSVGLHLLYSGNMGLFRGAFMLSGAPTSFPVPWPHDASARTLHPLPGPAQCPSPIQ
REHGPPRNDDLLACLRKLPIEKLYQATRTLTDDSPSNAWFPYYPVLEGEWGTGEGMHDAA
RGSGGWLNVRPSERINRGDYNKVPVVLGSVLDEGTRFVHPKIGEGVDEFLEVVKDVFDFT
YGAVEDILEPILNWYPADPSFGSPFQTGNETFGLSRTYKRLSAFLGDILFQAPRRHLLRE
TPKDFGEDSWNYLYLEPREGAEPRLGIQHGADLPAWFGNPEGDDEPMVQLSWEMTGYLIN
FVNRLNPNGAGLPRWPQYGMDRLTLQFARSNTTIVSDSERLETLRFLNINNPIFAR