Protein Info for mRNA_8324 in Rhodosporidium toruloides IFO0880

Name: 16692
Annotation: K14026 SEL1, SEL1L SEL1 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1080 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 992 to 1011 (20 residues), see Phobius details PF08238: Sel1" amino acids 246 to 273 (28 residues), 8.9 bits, see alignment (E = 0.00014) amino acids 545 to 574 (30 residues), 22.3 bits, see alignment (E = 8.6e-09) amino acids 577 to 610 (34 residues), 22.7 bits, see alignment (E = 6.2e-09) amino acids 811 to 835 (25 residues), 16 bits, see alignment (E = 8.4e-07)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1080 amino acids)

>mRNA_8324 K14026 SEL1, SEL1L SEL1 protein (Rhodosporidium toruloides IFO0880)
MRTRWLCLAVLTIGLAVHAQPAPPPQQQITFGISTGAQLRNEPEDRANGPAGGVEGARGG
SDDQTAQLAFGSDTTAGADPLSSDPAADTYALAVSLLDTLTSHSPPSPPTLYSPHIASLD
VPFSARIEPILQRSSVGRFALRVGRLYTGDAAKRRVQGGRDWSVKGAILGLKGTIERFAV
DKTVRAGKGASGRRRDGKGWKDRLENAVLNGGVVLDREEIEEGMAEVMELLQTAGERGSA
AAWVLLGDLHLSGHRSLTADPAEALRLYTLASERYGSPEAQYKLGFLYGSNFGGAAGGLE
GKGQQGSALLHYTFAALSGHVPASMTVGYRHWAGIGTKQSCKDALPWYKAAADAAMISFN
SGPPGGRHLPPPKIRLSDLEGGPYGPGASSSRSSLVTGGSNAQTQQEWDDLVEFHLFHAE
RGDPAYMYRLGRLYYQGFGAGGLGGARGTQRGRLQPGVAGKTDNLWDGGRDFHRASKWFL
RLARKVWPSDPREAQWSPKWGPLSKHPQRAGEAPKVGFYDLSKDKKNEKVDDHTAMVAGL
AAGFVGKMYLRGEGVSANYAKAFLWFSRGSAQGDRESTNGLGIMYRDGLGVERDLKKAVM
LFHAAAQQDSSEAQVNLGKYHFGMGDFVAATTYFEHAIRPDNLRTPDTFQAYYYLAELAA
RSTSATESCPVAVSFYKRVAERGDWDHEVWWEAERARERGDLRTALLGYWIMAERGYEPA
QNNVAWILDRDKKRLRVPLLDAVAPAPSPATKQLDRLALAYWTRSAAQDNVDALVKMGDY
FYAGLGTEDGLPQLEKAAGCYQSAATTKFSAMAMWALGWMHETGKGVPQDFHLAKRQYDM
ALETSSDAYFPSTLSLVSLYARALYHALFKSGDDELHALSLFAKDPDVDGIGAGFAEHGV
WSFGRAWRDIQRNWGIDPGPEPEVVPLQQGRVGAVAGGAAGAAGEAGRDAQRAIEAHDEG
LDWREYQDQRGFGRGHGEDEDDEFYLEDEGDFGGTVAIVALCMLLAWLVYFRQRPEHQVR
RPAAPVPAAAPAAHPQPPQQPAPTPTAAPAPAPGREAGNAAGNNGRLEETESDEDEGRGR