Protein Info for mRNA_8332 in Rhodosporidium toruloides IFO0880

Name: 16700
Annotation: K10082 LMAN2, VIP36 lectin, mannose-binding 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 337 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 308 to 326 (19 residues), see Phobius details PF03388: Lectin_leg-like" amino acids 63 to 279 (217 residues), 216.9 bits, see alignment E=2.6e-68 PF18483: Bact_lectin" amino acids 79 to 273 (195 residues), 34.9 bits, see alignment E=1.7e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (337 amino acids)

>mRNA_8332 K10082 LMAN2, VIP36 lectin, mannose-binding 2 (Rhodosporidium toruloides IFO0880)
MPSDRLRPRAMLRTLLALLLVSASAPGFFAAAKGGSPASGSGAGGKGAAVSLRANTEKTV
PLRTHSLYAPYVDSDLQNRWFDFGGSTIINTNKHVRLTQDRPSQSGWLWSRLALAPNSFE
VEFEFRVDGKSNTLHGDGFAVWLTKGRAGMGPAFGNIDYWDGLGIFFDTYANSRHSYSFP
RIYGIMNDGTKSYDVGKDGQGQEIGACSIDFRRTDVTAKARITYFKGRFLELAIQHAKWD
EWTTCFAVEGVELPSQPFLGFSAVTGDVSDNHDIISITTSNGACCAQNSPPPRRGVPGAS
FFSSLFRVLKWVFLLVVVVVGVMAFRGRKAARNAKRF