Protein Info for mRNA_8334 in Rhodosporidium toruloides IFO0880

Name: 16702
Annotation: BLAST mtf1_muccl ame full transcription factor mtf1 [Licht...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 918 transmembrane" amino acids 344 to 363 (20 residues), see Phobius details amino acids 399 to 419 (21 residues), see Phobius details amino acids 431 to 452 (22 residues), see Phobius details amino acids 477 to 504 (28 residues), see Phobius details amino acids 513 to 537 (25 residues), see Phobius details amino acids 552 to 571 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (918 amino acids)

>mRNA_8334 BLAST mtf1_muccl ame full transcription factor mtf1 [Licht... (Rhodosporidium toruloides IFO0880)
MHRRPSPLRVDTHLHPALVPDALLSHARRPRSSTLTELDEHSTAPWRAEGNGGLDAVEHD
AWSRRQRRASGSGAEAADLLYPLRGARRDGTGSTTSLLTASGSASDSAYGTLDELDSDAP
DAEADPLCESPLPAEHDERAAAWRQRVAESFRARSERRVQAALDSRGWKAAEQEQADGAY
WRRKTRSLERRLLESVQSSPDVGQDPIFAFDVAYDADSSFDSLDSLFSPPDSLTPSTSAS
SSRSSPEPSECGESDSAAIRLSLQRKRRRLTKQVDVVDAAATFLSRRHTLPRRSRPREAS
VKVSFPPSPTKRRSVSSLASTDSKTESSTPHEPAPKPPTLLPPLTRTIVILSATISLASY
LSPVPLVTPLSPVHLRHADTPASVLLQSANASLAPLLAQPSLPGVVLAATTLCLAARLER
RTASLSGRSKVAVAGVAWAATVGVRVLASWVFGRVLGWAHPQFFSTRAIHEVGAGLAPLL
LALNLVSFSSSSFLDAALLAANFVVPVSKGGAGLWLGISAVLVGLVGALVLSLIRYFATP
PATSAKSASSSFSGSHLLALALLPTLAFYAVSSSPSPLQTDVAFSQLHPSQPSLLTVLLM
TAPRPGTPDFLIQTVESWLGALPDPSSPLMLDNSTSFSPLTMPTSSRLRVIVYTHFASHP
MFELAQSTFASNLKAAHYIEWHRDPRAFAAQNRLDQRLHVARGLEYAASKGGAYVLLTED
DFPLCEDARPARGKERSWDNAWKELQAALVATNALMPDPFADAPDSPPGHCGLFLATGGS
GLAIRSSIAARLPALLLGSDDPHGYAREEAAARGEIVVKREGEGADTPDLVIQDCLRGKL
PECAVCAPGVGGGEGSARLPGGVVGERVGKSGLAGTERLLQRHLGYNASTLPGRKYGREE
WACGWRQPFNGEPDILTV