Protein Info for mRNA_8336 in Rhodosporidium toruloides IFO0880

Name: 16704
Annotation: KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 427 PF00724: Oxidored_FMN" amino acids 55 to 351 (297 residues), 139.2 bits, see alignment E=1.1e-44

Best Hits

KEGG orthology group: None (inferred from 49% identity to fgr:FG03710.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (427 amino acids)

>mRNA_8336 KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase (Rhodosporidium toruloides IFO0880)
MSLLSQPVTFPHSGLTAPTPTLKSAMTERLCTYDAENLDERGKVTPEYIKLYEEWGKGAI
GVIVLGNLPISRTDLEAPKNAIIDARSSWDPVPGLKRAIDVAKAHGSLVIGQLTHGGRQV
SEEVNKNPVSASDVQCPPMGGMTFAKPRPMTVQEIDDVVKAFGYGAKVLYDAGAHGMQAH
SAHGYLLSQFLSARVNKRTDDYGGSLENRFRIVRRVFEEVRRQVPDQKFMLSIKINSADF
ADGGLTFEESKQACIWLDQIGLDLIELSGGSYESLAFEHKKESTKKREAFFVEFAEQIRP
ALKNAKLAVTGGFRTKQAMEQALKEHSCDVVGLARPLTAEPYLIREMIEGKKDAARENKA
PNAVQTGTSIVQIGAIATGKPIPDLADEAVVQDVLALLQGKKPKEDKPHQEQDVKTSYEK
SENKGKL