Protein Info for mRNA_8341 in Rhodosporidium toruloides IFO0880

Name: 16709
Annotation: K14569 BMS1 ribosome biogenesis protein BMS1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1187 PF08142: AARP2CN" amino acids 228 to 320 (93 residues), 75 bits, see alignment 4.2e-25 PF04950: RIBIOP_C" amino acids 721 to 1013 (293 residues), 320.7 bits, see alignment E=1e-99

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1187 amino acids)

>mRNA_8341 K14569 BMS1 ribosome biogenesis protein BMS1 (Rhodosporidium toruloides IFO0880)
MDGAQQTNRAHRPAKAPKKGPEKGKNPKAFTSASFRRAEKQARRNVEKDQTRLHVPAVDR
TFNGTAGQGGKDVEQEVPPVIVAVMGPSGVGKTTLIRSLVRRYTKNTMVDIKGPVTVVSG
KNRRLTFIEVPNDLGAMIDVAKVADLVLLMIDGSFGFEMETFEALSALNSHGLPKLIAVL
THLDLVKTPAMLKAQKKRLKKRFWTEVYDGAKMFYLSGVMNGRYPDREILNLSRFISVAK
FRPLTFRNSHSYFLVDRFDDLTSREVLRKDPKADRHVALFGYLRGVPLRPPGPSNSVRVH
IPGAGVDAFDVSRMLELIDPCPLPTKDSEKRRKMGDANKVAYAPMSGGSGQGMTWDGERV
WINTSGTFSKRRLEDGEQLPNDEVGEEGVKMVLDLQEADATLAESMAKSQIRIFGGSEPV
TAAEYEAQQAAQAEASTSSGKRQRRAAFNDAVGDYDPAEYDDASDEDDDLNEEDFDTDEE
ALEEGDELAFEGNGKKGGKWRASASGGERAEDVAYADSDSDLDLILDDDERAARDARAGS
DGDSDEEDFNEDEEDEEEQGPQWKKNLAARAAATMSSGRRRQNLMKLIYSSTLTPEQIAA
GETEDTVAAQEEADARREALGEEVAEDEDDLFQLAKRGAQGDDEDIFRLPVNISDLEVWE
DEEFLDSIRHLFITGDSAPTGDGAYEEEGGDFEDLEADGEGDAGDKSLFPPELDELDELD
DEERKARELAEKKEELKRKFDAQYDDDSDEEKMDFYTEQKAEMERKLKATRAEFAEDDAE
TRALVEGYRPGTYVRIELHGVPCELVQNFNPRIPMIVGHLLAHEESFGYVQVRLKKHRWY
PKILKTNDPLIFSLGWRRFQTVPVYSLDDGTRNRMLKYTPEHMHCLATFYGPISAPNTGF
CAFTRFGSETPSFRVSASGVVTDINGTTEIVKKLKLTGTPYKIFKNTAFIKDMFTSSLEI
AKFEGAYIRTVSGIRGQVKKALAKPEGCFRAAFEDKVLMSDIVFLRAWYQVKPRQFYNPV
GNLLLRDKSAWQGMRLTGEVRRAEGVKTPQDVNSLYKPVVRETRRFNTLKVPRKLQAALP
FASKPKMQLPQKNKTYLQKRAVVMEPDEKKALSLLQQIQAISRDKDAKRKEAKQARKVER
AKKLAKEDEKRGEREKKEKQEFFAAQGRAEKRKAEGGRFANKKRKRE