Protein Info for mRNA_8348 in Rhodosporidium toruloides IFO0880

Name: 16716
Annotation: K05349 bglX beta-glucosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 793 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details PF00933: Glyco_hydro_3" amino acids 101 to 347 (247 residues), 110.7 bits, see alignment E=1.5e-35 PF01915: Glyco_hydro_3_C" amino acids 383 to 652 (270 residues), 134.7 bits, see alignment E=6.8e-43 PF14310: Fn3-like" amino acids 711 to 782 (72 residues), 74.7 bits, see alignment E=8e-25

Best Hits

Predicted SEED Role

"Beta-glucosidase (EC 3.2.1.21)" in subsystem Beta-Glucoside Metabolism or Fructooligosaccharides(FOS) and Raffinose Utilization (EC 3.2.1.21)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.21

Use Curated BLAST to search for 3.2.1.21

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (793 amino acids)

>mRNA_8348 K05349 bglX beta-glucosidase (Rhodosporidium toruloides IFO0880)
MLTKSPLLLAFAAGTAVAAPASSSSTSSSSPAASASTLPGVLTSKGFTSQKWIKALEKAQ
QVVADLSFDQKVNFTDLRGDTHGCSGLTFPLPSAGVKEGICFADGPTGINSRYSTQFPAE
VTTAATWDRDLFYSRASSLAKEYAKVGANVPLSIVVGPAGRSPYGGRNWEGFSAEPYLAG
EAVRTTVTGFQDEGITALVKHFYGNEQEWLRIGAPQGGYFFSYPNQTIDSIIDQATAREL
YVAPFAEAIRAGAGGIMCSYNEVDGTFACENKEVLIDLLKEELAFPGFVLTDWGAGHTTL
GSALNGTDYVEAGSVKGNIYGSFLGEAVKNGSVPEALLDDKIVRMLTPYFALNQGSLPSI
DFNRYVASKDSASVARKIAEESITLLKNSNKTGRGLPLKDLQDLVLVGSAAAPAHYGILS
NLNSAVYYAPNNDYTGFVSDGFGSGGSPQPYAKDPLSAFTARGQQENRPVVVDGYFVDDP
EQGFVKTPFGQNISYLESKLAYSNATLVFTSAIAMEGFDRTTLSLANNGDNLIKYVADRH
DNTIVVISAPGPVDMSQWIDHVNVTAVLFTYFSGQEGGAAMANVAFGDVNPSGKLPFTIA
KNISDYDQGAIYNGSVGINPVANFSEGVFVDYKFFDKQGVEPLFEFGYGESYTTFNVSGL
SLSKNKKSNPAPVRETNEKLFVNGKQTSGLYDYAYTVKATVKNTGSVDGAEVAQLYLTFP
DSTPNKMPVHNLRGFAKPFLKAGKLQEVEFNLRNKDLAVWSVEKKGWVIPSGEFKVSVGT
SSRNLPLSKTFSY