Protein Info for mRNA_8351 in Rhodosporidium toruloides IFO0880
Name: 16719
Annotation: K14303 NUP160, NUP120 nuclear pore complex protein Nup160
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (1580 amino acids)
>mRNA_8351 K14303 NUP160, NUP120 nuclear pore complex protein Nup160 (Rhodosporidium toruloides IFO0880) MQRTSLNRFDEDSSLICAHTPCCRLTRTRAVLKSSTLATEPTSEPPNSCAIPSRPHHPHL SKRRRAMALSSRYTTATAFLEHASTADFFSYTVPTSAPIDESAPPPTLAQEDHALATSTW FPSAEVGGQSTGFVLSRIVEDAYTLELRWCAFSRTARQEGDSMDQDSAANASEDLDKHPG TLPPVRFTFPSRLVPTPSFVVTASSSTDKQLQIYCLTEAGYLYILTFPLSSLFYAAEGLG EGEWSDEYKVESLEGRTPVLVQGVDEGRVVVGCADGFAVCVELAEESGLVETELRMPSSF SVRSLIPSFSTRNLASPTKGTFQSASSLAAPNQLLSVACVSSATDADSPSSTFAFGVTRD RKLRIWSVESGACFRAIDLPRAKSSSTALTLASSSQSIDSPQASRNGSLLSPAPQTLVKL VHGSELTSYPAYLALFSPATSASPAAFILYGLATDASSGELSELEPIAERTCPSGSIGSL VDFGVARMDLSGDASWTLWTCWDEGGETEIRTIGVGELDAQAVETVEDEWVVVERGTAAK TATWTAAYFDDQLRDSPVSVADTFLRHISFPGRYPPATLDHALQQYEELILSELETDGVA APAQFGLEFTTQLERAAAIVGSSVVLQQSPQTGAFLHDEYNKQLKIEWLRFIAMLNESRS VALYPTCLALDEDRGIAAVFGRDSVTVPIVREAVHTLRSLSTPQQILAAQAEPENLLDLP PALSADYTLRSDILPLLAIIRDLQSRLSTNDLRTLESLLLEQIRAPFTADMEDTALDLFE KALESALPDDSVAQIVAALKGLDSSERAVDTFLRLLTSEQLSPIAASVADEQPATDLSNA LLADALSTSIEARYELAKGLVAVLLVVWAGEDEEAVEADVGVAPAPQERLFARLDQTTAA AFTTLHALAAMQWIAADLASPSAEALAAVQKQLGAPGDDGVLERFGELRMKDHDGADVIP VPTYGLLSALLRTPDFAASLLPASRSSLPVALAFSAAGVFRAFGILPPSTATQPEAPTAS TIIGMRLQQLALPAQAAEWVELWPKTAGMSYVRGRAMLDLLDGDGASEALEKAASGLYGA DLVEDDDDSAAALLAVLPSEVGSSLARYYQHVVSLFVPTSFDGAIARFAQLALDALTTEG LHDEAAEKDLWIKLFRSYAALGDYVKAYEVVMAAPYHETQMTCLAHFISVVCENGAASLL TTFSFSGLEADLERNLAFRARNSDPLARPNYYRVLYAYHTAKGDYRSAGTVMYQQGRRLG ELSTKQPGSYRDIATLQCQSYLAATNALSLVAREHAWVAVVEDEASERGHKRRKLAYHIP EDEFEPSVASRQLEVLDVNDIRKEYCVALSRLQLSAEFPELERTNFHLDPDSVVALFSQI GNFEQAFWAGRVLDVDLSSLFEVIAERCVTLAQNPEGAEDASWVAMSSEAATWEGSLSSK AWRLLERHLDRHDRDVGQRYRLVVLERTLALNRGGKVPSFLTEHVKRHDLPALLRTLIKY DRLDEAFVFSLEALKSAPSPSTPFSTTEPWSLYDLLLSLPSGDSASLSDDVLKQRQAELR EAVDARLAALDKADKQVRKA