Protein Info for mRNA_8358 in Rhodosporidium toruloides IFO0880

Name: 16726
Annotation: HMMPfam-Bin/amphiphysin/Rvs domain for vesicular trafficking-PF10455,HMMPfam-Fungal specific transcription factor domain-PF11951,SMART--SM00721,SUPERFAMILY--SSF103657

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1057 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF03114: BAR" amino acids 59 to 305 (247 residues), 56.1 bits, see alignment E=6.8e-19 PF10455: BAR_2" amino acids 67 to 144 (78 residues), 51.2 bits, see alignment 1.6e-17 amino acids 146 to 307 (162 residues), 84.5 bits, see alignment E=1.1e-27 PF11951: Fungal_trans_2" amino acids 663 to 1055 (393 residues), 46.8 bits, see alignment E=3e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1057 amino acids)

>mRNA_8358 HMMPfam-Bin/amphiphysin/Rvs domain for vesicular trafficking-PF10455,HMMPfam-Fungal specific transcription factor domain-PF11951,SMART--SM00721,SUPERFAMILY--SSF103657 (Rhodosporidium toruloides IFO0880)
MRSNAWICYSFCIPVHSIPLPPRILIFPYGPRSVAGQAASTVQGATQNIDFNTTGKNLSK
GFATFSQTVREKAGQVNEDDVTELPQEYLDLERRVDGLRLAHQKLLRVAKAYEGHYDYPV
NLGESATEIGGSLAHNLSAWAAAATKVQKTLPHALSRAAASGAVEVGPGRLSNVLKTYAV
TQDKVGTARTRMDEDISKNFLQPWSATLNSSIQAAMKARQNVTKARVSLDATRAQFKNAT
GQKQEQSRMEVEAAEEHLVEATEQAINLMRSVLENPEPIKNIHALLKAQQTFYAEASEAL
ASVLGEVEEAGTQAEAEWRYVPTSLRCVRRRCLVHELPMGRSRHKKCDETHLPEHGGSCK
RCFDGSWVCQWPVAGGGNLRTFVRGAAKEKRETNGPASVGRRERERALVMKKGERRASIA
DGQEDVMNGSAVDGTSAASTSSLSPFASTSLPPISRQSFAQPAYPNLSAPMPAFSMPLPS
MSPSGYPASTSAQPYLATSAPLASLYNPAASPPALANPAATLALETNDLSQFFQSLDAEF
ANWDGVETAPLISPVGPAGAAAGLADSSMAPPTAGTALDGTNGANGTDVAEGRGRLPRLD
FSNTSTSDGPASAVPIDDTEPTSVHQDYNTFNNGFFRSLPKPLRDIVVQKVHNVVTTTEL
GRNAAMAIVMLYRLRLQQQQRPPEPADSTAADGASNEEQQARLLAQSNHYFQRALEHLQT
PIPLEAKMVAMLDLQTFQFDQFGAAAANAMLLLGEVWINEALGSQPTLDLSAMRDPANAL
LTAIACTDCLRCISIPGRRTIFSFPDLPGDPSNGTPSAVVSDVSAHKLNVDTHLGLPVGL
LLCVAATTNLSCDMEALPDELVRVKADAIEAAIRGWRPPPPSPHELADPVSFHDKASTAE
MWRYATLVFLYQAVHRRGPLNRVIREASQQIISIGSRMLQPNRPVPSSHRAAPSAPPSAA
ASPSSAAPGSPHDSPLYDDYLSAPSTRAVPWLLAGTCALTPSDRALCRQGMLECGKQLAY
QDDVAALERVWEAVDEQGWGVEWRALLQSEGRAVAFL