Protein Info for mRNA_8369 in Rhodosporidium toruloides IFO0880

Name: 16737
Annotation: HMMPfam-Transient receptor potential (TRP) ion channel-PF06011

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1215 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 219 to 239 (21 residues), see Phobius details amino acids 307 to 327 (21 residues), see Phobius details amino acids 411 to 440 (30 residues), see Phobius details amino acids 533 to 553 (21 residues), see Phobius details amino acids 560 to 581 (22 residues), see Phobius details amino acids 593 to 610 (18 residues), see Phobius details amino acids 616 to 635 (20 residues), see Phobius details amino acids 642 to 663 (22 residues), see Phobius details amino acids 669 to 691 (23 residues), see Phobius details amino acids 703 to 725 (23 residues), see Phobius details PF06011: TRP" amino acids 292 to 728 (437 residues), 101.1 bits, see alignment E=3.1e-33

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1215 amino acids)

>mRNA_8369 HMMPfam-Transient receptor potential (TRP) ion channel-PF06011 (Rhodosporidium toruloides IFO0880)
MLARRLAQLAALCLAVSLANAQVLRATRLRSCLGRGTLVAPEDRQLTFTNLYAQFDQGQT
RVGEHVGGINLQSLPEPIFNQDGAILTGTGDVLRVVLTGTTVAEAQGYSNDTGYLSTLVV
DNQVLSFDVFNNKSALCSAVRTNEGTTGTTTNGSSTVQESGCPYSGDIGLGFVVPLASSY
PLTTITTNLVALDPSQDALHLACYDLSFTPYYPDYFAYPLVRYLIIGLLALYLLLYSIAR
FYASFTTYRQDNETHLASSLTLKLTSRDAVSSRRAAFRSIWFGAWAGRQVVASGSLRRYV
TPELRELFTLLAWFSLVGTVAVDWPGFAYPVFKEAAWTALVYNNSLPFTSPAAPVLPENG
TLPPAYAAQMSDITSPLYLDAALPNVLLDLDPERDGIERWARMVGVRHQDLWSVCAFTFF
ATCAGVVGAHAVWYGLAAALDAVVPSRRARAEQRLAAEDKNGVDGDEGLQKEAGTRESYG
AGRRSEGSMGRFMGDVEFIDDEYLEEQGEIGRDRTDELYSTWRLHLASLEGNLVRVLLFF
HLPLCLFSAYQFTLHSSSPISTFALAVVTFAVACVLVPLWLMWQLHVKPVRELYTHLPTL
LALGPLYNTYADECVLFPAVTFGYNLIVGIVIGAVQGTGTAQAAVILICEVAHTLITSLW
LPWGDHSAMGPLAFLFSLARIIIAVLLVVLSPTVNVSPSAASWLTYIVFLVEGLVLLLLI
WVIAFKFLELVVRVLGGVPFDESRSSRGGGFFGAMRKLERRSGGGGGKKRRRGDPAPRTQ
AARQRAAEERRRRNLHRERFAGGTLGGVSDASSVGTRTYILPSAARMAGHPGAAGSTLSL
HGNSPFPSSGLVDDDGFIMSAMSSHGWDSASETSSARPGFVKPGHYASSGAGGPILRSGP
QHWGSQVNVASAASPASAVVVAASPLAASSPSPAGGSGFQRVGGGRATHNNPYQLAAGET
AYPPYPASSADMYGPRRHSPSADLALARHTSPMADGGPAQRQPSRPSLTLPSTSALLSNS
VSPGGRLDDEHNRRLSTRVRARRARQGGFFGRFKRQRMQYSDDEYTDETDETDEDEPRAA
RRGGGGVFAALRGKGRRRGRGGEEREMVETGFGGGGGEEEPPFDSVPGDSGEKGFSVVRK
PRPRPAAPAGQPSETPRSTDFAQHEPLLASRGGRPDSAASTSQPPHVSVEAPSRPGSLRG
EQIGEAWEEVDERER