Protein Info for mRNA_8385 in Rhodosporidium toruloides IFO0880

Name: 16753
Annotation: HMMPfam-Protein of unknown function, DUF608-PF04685,HMMPfam-Bacterial alpha-L-rhamnosidase-PF05592,SUPERFAMILY--SSF48208

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 675 PF17389: Bac_rhamnosid6H" amino acids 244 to 431 (188 residues), 24.8 bits, see alignment E=1.3e-09 PF17390: Bac_rhamnosid_C" amino acids 580 to 642 (63 residues), 35.9 bits, see alignment E=5.2e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (675 amino acids)

>mRNA_8385 HMMPfam-Protein of unknown function, DUF608-PF04685,HMMPfam-Bacterial alpha-L-rhamnosidase-PF05592,SUPERFAMILY--SSF48208 (Rhodosporidium toruloides IFO0880)
MRRLSPPSPATSPRLTEHDRHLEPRTSHAPTRLLPAQNSQPSTWEVDSNKGVYIRGQKPA
TTVKGANAKNYTLAFEANIDYGGVGWRLDTEIDNIFAEGPYLVLTSNYPEGSFVNYNHSL
VPPSTLVLGRGWSLQNQTTLTGWHLDSFPVGFDVTEKTWHNIETDSPGDGTYTVRLDGKQ
IAHFNLTAYNVGARPPYFPPCAYYSFALGPWQDQAAWYRNVNVTLASGQNWYSNPMTSED
IKVEYGVATNDFTVCSDAGKRDRYSWLGDRQISARSVEAVGEFEYVSGPAEQAFARQIAS
GEVPSNMLFSQLDPLGVQGRTESLDLILVDWESKFFDIIYHYWQKTGNDSFLQAHWGDMR
AMMAYVMQTSIDPQTSFGTNGGSGPAISSTALNIIALEEMAEMGSHLGYSSAVAAYQVQA
NLSRKALEGLWNETGGFYAFPGKEYSIDDMAWIELAKIGTAERRDKFWSHLPSRQVPGGY
VDPPADNKFDLLGGGVKISMNIAADLLWGLGERGDGKTAQDLVKRTYGPMVERGVNYTGA
YWEFLSADGTYPGNDLETAQSHFWGGFPPPTAFLTEYVLGVKPTTPGFATFEVAPISGWK
DDWVEGRVPTPHGLIYTAWGYDSAGKLHMEVTAPKGTTSTIKPPFEGLFSVNGKAGQSGT
VKVDGGKGKVMIVQQ