Protein Info for mRNA_8391 in Rhodosporidium toruloides IFO0880
Name: 16759
Annotation: HMMPfam-Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A-PF12222
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (618 amino acids)
>mRNA_8391 HMMPfam-Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A-PF12222 (Rhodosporidium toruloides IFO0880) MRLCCLLLAFAGTLTAAFELPADPQHPFLPVHNPHQSTGSAGLKLEDKRLWLRQAAFNGG EEQYEKPGKPLRNLQVQHPPIVPVGGRKCTFELLKHDFANSYYQPAIVDYVSPSSEECGF LTEDSASIVLNLTVTSNGTQFDRLASLSLAHVEIWRTSTAEPIKNGIIWTHEKDVTRFAP LFAKPCRLIFELNNIVNEHYTGTFSTTLSVTFYAPTADSPRPRSADLILPLTTLSKTGSQ MLVYPGDANVHVEIPVNTAEAWLEVVATGAAEEEFYYTNLLDRGKKYLPDAGLIGKGPYR EVQVRIDGLLAGIIYPFPVMYTGGANPLLWRPLASLRAFDIPSVFVDVTPYLPLLCDGKQ HRFGFSVLGQGKDGSVNDNWFITGALHVVLDKTEPPVRTTGRLLLHQIPPSPLIFSGIFP SIDNSTLKTVVKAAREVKVVSRVVTGSGSRLVRASTVASFGNEQYYADNGTFQHVVQDIQ VAQTSEDLSLHRYTYRDVYSFPLDLTTNYTLFESDHRFAAWVDDYGYDRARMLPEALGGV VGRATLTRSSQRGEAEITARKGRRSTGWGEMSETYEFVGARGETYKEEIRAVNASIVSRK RSGSLASRVDFEVDGRPG