Protein Info for mRNA_8394 in Rhodosporidium toruloides IFO0880

Name: 16762
Annotation: KOG3680 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1384 transmembrane" amino acids 769 to 786 (18 residues), see Phobius details amino acids 848 to 867 (20 residues), see Phobius details PF07923: N1221" amino acids 72 to 204 (133 residues), 68.8 bits, see alignment E=4.6e-23 amino acids 278 to 447 (170 residues), 120.5 bits, see alignment E=8.3e-39 PF11882: DUF3402" amino acids 711 to 1080 (370 residues), 426.9 bits, see alignment E=1.3e-131

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1384 amino acids)

>mRNA_8394 KOG3680 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MFQGQGNGAAGQGQQSYASMVSAGLDRPQLGNGAGAGAGAGPAGGGPGGVASPTSLPRPK
QLVYTFPSPPPDTADLLSELEEFYSYVEIPQVLEHMESWNTSDEGWKGEQGKLTKFTKSP
PAAQQAYISNLLTTLLSSSSSHAIRHTAARHLLHIAHGTFSPTTSTSPEHHLHLVLTNCR
VLREAGALVKVWEALKRTGREWENISSLVLGSGVGGAGASSGRADDGTSDEDEAEGPVGP
GEGEESDSHALHRVQLRPIPRPRPPKIHLSPPARTQEERESDEQREKERQDRLDEINAEL
AILLAVLYFMVECARGDDKWGEELMALDPPMPVYLYNQVAGLREKNAKGYPVKKASPASP
YDLSKLPTDKRPIQLLLLLWKSMLCTLGGLKDVARVKALVREVEGLPKDEPGDRPDYRPW
TKATPPDLLAFRNETLAKYPSYTPPPAGSLLPLPPPLQALSNNPTTLDRLSAAAAPVPVR
PTFSYHINANHDPSLPSNLPPPPPAAWPVQPPTPAPSPPPQLNGPFGGLQQQSPQQQQGQ
QQGGQLANGPVPGKPKKQQFQTDQTRPFPLPFAPANAKRGRAVPRAVEEAGELYRRNLRV
STELWQAWKVREEFRGEEMGLTRAEQVEREAVVKEEERRRKAAKEQENKETKEGREMRRK
AMALGRRLEELATGSAGSKSRTKAHSTLSDGSGGIDSPITDDVAVASDDEDEDEDPMDPL
TVLRNLARSIKKEIEVEPDEKKRKELEERRMDVKRLERVEILYRQTLPHLQSAVIVLLKL
LLATVTANQNLSNPNQNAPEPTSSDPPPDLSLEDIDILRHREITSKAVSAILILTLKWFK
ASHVMKFHYFSQLLVDSNCLLLILKMFGMQEVSTLVRIKHEKPDYNFFKFCNDHINPSSA
SPRPEDAMLSLPPPGNRPRSPSSSSPTDSAPIGAASAHGVEGEDVEIISDYSWRNFFSTI
NFVHILQKLTKRKTHRVLLMVQYKSSAILKRILKVAHPTLQLYVLKVIKSQVPYCGRKWR
QSSMKVITAIYLHCRPDLRDEWLAGIDVDADVEESLPHEQALRSLVRFFNTKHYSKHAPG
LHRRSSSIPENANDPSPDFNPGPVASVPLPPLSPHGPPPDPSALDDVFPPPRALSSIDVD
ATVPLQLAYGAIDPNDDLSGYEVDDLLAAGADPSHGSRATDDASGSSAYTPSGSVGLPRT
STPIAPNSQPNSGQAIQVDHDDLLDWLNDPLGASDAAWERLGLEGYDGEWDDVSDSESVG
GWGFMRFGLDEPGATGTLADDGGEVLNEQAMRHEWEHISPETISALEEERAASRVPNSPR
PSRRRSSTGPISPALRPVIFDRDDDGTCGPSDNSAMQEGDEEGPVPTVPHEGPAIDEVEL
IFNR