Protein Info for mRNA_8398 in Rhodosporidium toruloides IFO0880

Name: 16766
Annotation: HMMPfam-Histone deacetylation protein Rxt3-PF08642

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1006 PF08642: Rxt3" amino acids 753 to 855 (103 residues), 64.9 bits, see alignment E=6.4e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1006 amino acids)

>mRNA_8398 HMMPfam-Histone deacetylation protein Rxt3-PF08642 (Rhodosporidium toruloides IFO0880)
MDGALQGAQQQQPAQQPAPPAQPAHPAPASNADAHKQQHVQPVRSFLPSASLAAAEKSLF
PNSMPVRQLPGIHSFAPSPANSSPAGGAASPAGPANAGKAGSPAGSAGGAGTPMGLSAGQ
ARVPGGEQKRFGAGSVSPYGAMPSRSPNLAPASSAAPNSHTTPTPPIIPGPASGLSPPLA
ASSSGPAQRPLPSLTSPLPPAATATPGSATSPPPPHQPGPPTSSASTTAGRTAGNPMSVS
SMLSGPPRDRPVSAYSPLANAGGASAAGRAGSPPQPPVLPPASTAGGVVDGTQKSPQMQR
QQGAPPATQPGTTLPAYVVSSASNPAPSTKAAVEPPPSSALGAARSSYPPLPSAFARENP
YSPSTTSGATSGTATPATAKAHAAGPNVQISQQHQRDAAAVEVKKSLFPALGLGGAGMYG
RPTVPGVATGARTTGAAATEAGQGATGSSGQPYPWQAQAAQQAQQVLAAQQQQQAQQAGG
RKAASSRPGATTSVSAPAAPTVGAGRGGPTAVGVKGAAGKLPQQHHQLQQQQQQRYPPPP
ALDPYGGARNVQPPPSSAAPTPSHAPPAAPGVNGHTTKRRRSDASEQQQATAPPARRQKS
VTPPPLAPPLFTHIELRKAMIYPPVVEILNRAVDEWAKNSVKEGEGERRFLGRVTYDALV
SPAKLLDGGVLARGVGGYVEVVVPTTWILGPHRLSAPSLANPPIQSSCSVPPIDLHPVVF
DIGPPSAYNGEPLPFTLSTTPLLLPSHLADLPSIRKREVWGTDVYTDDSDVLAMLLHSGW
LRVTRRERRVKAGEKGAGADAIRRARIPGEERIVLPPTDGEEKGVPKALCVKLGVVPALV
RYEGIERQGIRSRSWGNGHDGVSLRIEEVKPLDVRHSVSRWRVRRSHGLGLQDVPPEPVR
RTRKTRAALCAHQCAELYHDDFSHHDDHHAPAIPPAKRYRFAADPPALVNGDGPAADRSE
LLVSDTFVIDALSGRGTFVGLNEENERGTGFERVQGEGRMEVEAAA