Protein Info for mRNA_8418 in Rhodosporidium toruloides IFO0880

Name: 16786
Annotation: HMMPfam-Cgr1 family-PF03879

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 143 PF03879: Cgr1" amino acids 35 to 142 (108 residues), 92.3 bits, see alignment E=1.2e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (143 amino acids)

>mRNA_8418 HMMPfam-Cgr1 family-PF03879 (Rhodosporidium toruloides IFO0880)
MVPIPVWERPEVKTYDPEAKTDGPLPTELPETAQSSTNVSGRWWKTEHKATTRAQSGQKA
PQQLDKAWKQREERRKRDEAIKKLERELKQEKEDEADRKKRINLERREKEAEKKRLAEMA
ARMSAKKLQRMKKRLGRSKKVNG