Protein Info for mRNA_8421 in Rhodosporidium toruloides IFO0880

Name: 16789
Annotation: K05285 PIGN phosphatidylinositol glycan, class N

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 964 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 495 to 518 (24 residues), see Phobius details amino acids 530 to 549 (20 residues), see Phobius details amino acids 555 to 572 (18 residues), see Phobius details amino acids 592 to 610 (19 residues), see Phobius details amino acids 616 to 632 (17 residues), see Phobius details amino acids 643 to 662 (20 residues), see Phobius details amino acids 668 to 690 (23 residues), see Phobius details amino acids 703 to 725 (23 residues), see Phobius details amino acids 737 to 754 (18 residues), see Phobius details amino acids 762 to 779 (18 residues), see Phobius details amino acids 785 to 803 (19 residues), see Phobius details amino acids 825 to 849 (25 residues), see Phobius details amino acids 862 to 884 (23 residues), see Phobius details amino acids 896 to 915 (20 residues), see Phobius details amino acids 929 to 948 (20 residues), see Phobius details PF01663: Phosphodiest" amino acids 219 to 321 (103 residues), 36.7 bits, see alignment E=6e-13 PF00884: Sulfatase" amino acids 274 to 346 (73 residues), 31.9 bits, see alignment 1.5e-11 PF04987: PigN" amino acids 488 to 922 (435 residues), 415.7 bits, see alignment E=4.1e-128

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (964 amino acids)

>mRNA_8421 K05285 PIGN phosphatidylinositol glycan, class N (Rhodosporidium toruloides IFO0880)
MADPHTEPEPPRQPSWQLTAPRLLVLSLLFHLVFVQSIFDVYFSSPVVQVTDRFSVTDED
GRGLAKRVVLFVGDGLRADKLFQTYASPPFPSSDPPPSPVPSPHALVPPSSSFNDERTTP
APLLRSLIQSGQAQWGVSHTRVPTESRPGHVALIGGMYEDVSAVTRGWTTNPVPFDSVFN
QSSHAFTFGSPDILPMFALGASDPNRVATFSYDEEAEDFTSDAVHLDLWVLDQLSSLLKN
ASSNPELKAKLDAPGVVFFEHLLGLDTTGHSYRPHGPEYHRNIRVVDYVVSRTVELLSEY
YGDDGETAFVFTADHGMSSLGNHGDGHPDNTRTPLVVWGKGMRRREDWEEPERHDEYSAG
WGLKGVRRDVEQADIAVLMAVLAGVPIPANSAGRLPLEYLDASPSFRARAAFANAQQLLA
EAEAKSELKRRHALSFRPFPELVDSPERGYHSAPSHRREIQRLIDEGEYLEAEKRSVELG
EIALRASNYFQKYDWLMLRTIITVGYLSFMLLTAHSILSPSCSAASSSPSRLAVLPLLAF
VALSARFAIERAPLSYYLYAFFPSLFSFFVLHKPGPLLSLFRPSTSSTPLSHRLTGLLST
LLILETMAYGYTSRRAFAIIALAMGFIWPLTLDARWRSENRRLVAGWMAAMGVLAIFPVL
PVEKGEDLRVVSAGAALICGIGFVAIHSLGRTGSPTWTRTRRFLLAEIALTVACTAVTCS
SALSLQRKEGLPASNQYAGWMILITSSFLPIFHGRPHGQPPLERLSVLLFAFGPAFTILS
LSYEALFYACFCLALVAWIKMEASLTRAEGKKVDEGMGMKHVRISLFFLAFLHLGFFGCG
NVASISSFYLEPVYRLMTVFAPFPMGALLLFKLLIPFVALSAVSSAINHHLRLPPLSLFL
VSSILSEILTINFFFRVTDTGSWLEIGSSITNFVICSLLGLFSSALLAGGEGLLKGTAVG
LQTV