Protein Info for mRNA_8422 in Rhodosporidium toruloides IFO0880

Name: 16790
Annotation: K06675 SMC4 structural maintenance of chromosome 4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1719 PF02463: SMC_N" amino acids 407 to 513 (107 residues), 85.5 bits, see alignment 5.8e-28 amino acids 536 to 1673 (1138 residues), 145.2 bits, see alignment E=3.1e-46 PF13304: AAA_21" amino acids 431 to 502 (72 residues), 29.7 bits, see alignment (E = 9.2e-11) PF06470: SMC_hinge" amino acids 997 to 1108 (112 residues), 89.5 bits, see alignment 2.9e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1719 amino acids)

>mRNA_8422 K06675 SMC4 structural maintenance of chromosome 4 (Rhodosporidium toruloides IFO0880)
MPPRRKQPLEQYDTNAQPAAFSRSSRSSSSTNKHKQALAAAASRRATRKRVSEASTAATE
EDADEAEDSEGENVGFEGDATEEDEEDEDSEPVKSKRAAATRVARTVKQESATGRTRRAP
ASSTATSRRRNVREDTVSTAASDDEDEDDDKEEEEEPVKARSARSSRSSRSTTTSARSTR
GKKASTPEQPAAPLSPPATPAVGEDDEEDEAEQQDDDDEEEEEEVKPRVSASKRKKRVSL
APASPVKQPVLPTPEPESSAAEEEDGEDEQTAQEDEDVEDREETPQPPAAAAKSKAKGKR
RAIVQSDEDEQDELAQPAAPAAAQQVAPPSPAPSATPRSRSTTPTPAEPAAPAVAPAPAP
VAPAKPAPPTALTASALASIARQAAIDHAAQAAERAKELLGKPRLVIHQLVLENFKSYKG
RNTIGPFHKAFSAIVGPNGSGKSNTIDALLFVFGFRATKMRQGKFSELIHNSGVAGGAEH
APAAEGDADEDDEDGFFNPEEYDSEEEVEMRKRKGKGKAKGKKTARKAPSYAAAGGCDFA
TVEVWFREIVDSPTSRDDFSVVPHSQLVVARTVRRDNSTRYTVNGKNATPGEVKQLLLGK
GIDLTHNRFLILQGEVESIAQMKPKGANDHEEGLLEYLEDIIGTAKYKPLIEEASADVER
LGDERAVQMNRVKLVEKEKGALESRKKAADAYLHDQLTLVSLQNQLYQRHAHQAGADRVV
YEQQVAEAKAELDAEMERQKSDRERYDQGVEQYEVTKKNLKEIEDAANGLAKELATFEKA
KVQLTVQKKAADTKYAKLKKSLEEDKHAAQQAQSDIRDHADTLEKLVSSKDRLKAELEEE
QAALTKVMDSLRDKIEGFSVEIEQHQKSLAPWTEQIEAKQNEVKIATHQLEDVRGKSAQV
VADIERTEQEIEELKEAAKEKAVELKTLQKGRKDILAQIDEARQRVQQEKTVEAKHRAVV
NSAREKTAEAKASQKASESKGHVLSAVLKLKEQGRLPGFHGRLGDLGRIDDKYDIAVSTA
AASGLESLVVDTRETAEAVFDHLRKHNIGRAACIALDRFGKVDLSPIKTPQGTQRLFDLV
TPKDAIYAPAFRHVLKDTLVAPSWDIAHPVSTGKVDGQRWRVVTLDGNVAEKSGAAQVGG
SRPIRGKMSSRLAADDVSPQQLAKLEAEEKTATVKLEQAAEQSKQAEADLKVLEKQLTQA
ESSIPKVEMDLEANKQDAAQKAELLNELRGQSKPDAGDVKRVAQLEKAIETLEGELESLR
GKASKFEDKIAALQAKIEEVGGLKLRSQKAKVSDLQDQIRHNESRLVKAKTERAKAEKDH
AKATKAIESNTAKMQELEVELKDLRRQLAEKEEEAEPIRQTVEAAQAKVEEGREELGNLK
AELDEQEEAIIEFKKAEAKLRTIYTEQEKLLKETTRIFEHWTAKISSLEMPEFELLGDAD
EEDEDGNRPPEVEEVLRQLEPEEIEQIDVKRLKGEIALLEERLEKNNADLAVLQEYKRRE
EEFRRRGEEFEAVSREWDGAKTRVTELRNERLVQFMQGFGIISNKLKEMYQMITLGGNAE
LELYDSADPFSEGILFSVMPPKKSWKNISNLSGGEKTLSSLALVFALHTYKPTPLYFMDE
IDAALDFRNVSIVANYIKTHSENSQFLIISLRNNMFELAARLVGIYKVSNQTRSIAIDNK
ELSAVPDVPSVTLEEEEEEEEEEEEEEEEEAGSEDEDDA