Protein Info for mRNA_8425 in Rhodosporidium toruloides IFO0880

Name: 16793
Annotation: K06674 SMC2 structural maintenance of chromosome 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1205 PF02463: SMC_N" amino acids 3 to 1159 (1157 residues), 181.7 bits, see alignment E=2.9e-57 PF13476: AAA_23" amino acids 6 to 342 (337 residues), 30.6 bits, see alignment E=9.6e-11 PF06470: SMC_hinge" amino acids 523 to 638 (116 residues), 52.7 bits, see alignment E=1e-17

Best Hits

KEGG orthology group: K06674, structural maintenance of chromosome 2 (inferred from 49% identity to uma:UM05835.1)

Predicted SEED Role

"Chromosome partition protein smc" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1205 amino acids)

>mRNA_8425 K06674 SMC2 structural maintenance of chromosome 2 (Rhodosporidium toruloides IFO0880)
MRVTELILDGFKSYPVRTSIAGWDPSFNAITGLNGSGKSNILDAICFVLGITNLTTVRAA
NLLDLIYKRGQAGVTRASVTIVFDNSDKTQSPVGFENMPEISVTRQISVNGQSKYLICGH
RSTQQAVQNLFQSVQLNINNPNFLIMQGKITKVLNMRPLEILSMIEEAAGTSMFEEKKDK
AIKTMSKKEKKLDEIQSLLKEEIVPKLDRLREEKRTFLEFQKTASELERLSKLVIAWDWT
QDHLRVEKAKDAIKEGETKKKDAVESKKRMEGEIKKMEQSMKEIEKARDKELAKGGKVQG
LEKQLNALDMEIAKLKTQAEGKEREIKEEEARIKELEKAQKDLTAQRKARESSSKENAEA
FAARQAELEAASKSLTQSEDLLQTIEYGKGLSKDAKSSGYDGQLAAAKELAGRLETEAQL
AKHRIDSLQKELKEKEPKAKKAAAESKGLVANVENARKEKEALEQRLKASGYDEAEEVRL
EGERDQRAQTVEQLRQRRELKRREIVRTDFRADDPYPGFDRASVYGTIASLVELPEANAA
AATALEYAAGGALYNVAVRDDATVAAFVKARTIKTRTNLLPVNSLQVYVADKSRVAAARK
HGAELALNLINFDERARRAMESVFGNVLIAPNKTIAKRCTDDPAVRMRCVTYEGDIYDTT
PELRGGNSTSERVLIKVQELRKIEQELEMHRKALEELEVKLQHSKGAVDLKKALDQKAHA
LSLLEKSMQNSNATRVIGEVDTLRATIADLQEKIEESKSKQKDAQADVKRIEREMSELSK
DKGSKVKQIKADIAKQKTQVAKLEEAVESLRSEVLTDELELDQMKKEIASAGVELAEARS
QINKIRQSLSKGQGVMEEKLAELQEVQCVIAEETKKLKGYNDELDSLKEAIKGRKGDIVE
LELQVTQVEKEVEKAKKDAKDAADKVAKREKEFDWIADECQTFGKPNSPYNFNGTDMRNV
KEKCRQLEETHRTMKRKVNPKVLSMIDSVEKKEKDLLDMYKQVMKDKTKIEETVAKLDEH
KRDTLEKTWTKVDSEFGNIFAELLPGNFCKLQALEGKEITQGLEVKVRLGSVWKASLTEL
SGGQRSLIALSLIMSLLRFKPAPMYILDEVDAALDMSHTENIGRLFRTRFKGSQFIVVSL
KDGLFSNANVLFRARFRDGTSVVERTSQRTASGLYDKENAGPRAGGAGKAGKSRTGGAGR
VEVAA