Protein Info for mRNA_8427 in Rhodosporidium toruloides IFO0880

Name: 16795
Annotation: K11462 EED polycomb protein EED

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 808 PF00400: WD40" amino acids 383 to 418 (36 residues), 29.9 bits, see alignment (E = 3.8e-11) amino acids 459 to 489 (31 residues), 19.6 bits, see alignment (E = 6.7e-08)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (808 amino acids)

>mRNA_8427 K11462 EED polycomb protein EED (Rhodosporidium toruloides IFO0880)
MPGLGAARKSATRMHYDGATPDQDEGGDGVTADADMEDPHPSHDSSNGETGMNGDGDRME
TDETVNGAPSMAHDSATASTSAPSGPTPLARQRSSASVSHSAPNEITIDSSDTDASLSSD
SVEVSSGVSSDDEQSGGINGFSAGPRPFTTPSRSARAHRGVPHTLFSSPSKAAADGLDFA
AVPPDYPLPEPPFAFDVLNHAPIRHPGPPPSWQHPRDMTSEERHEHLRREDERKKRERDQ
RQVREEWEWEWVRCATTSPGTAAKGKEQKDFHSASFFPYPHLPGLKHMEGVCAVVGGTEV
RLMQISTVPPSQAVVQEVTAPFRRPNVHHDPPDHEEYFACVWSVSISTHPYTPMLAVAGR
GRLVEVFLVGRQAGGKWVLHHDRTITGHGEPIFGLVFHPSYPHLLASCSEDKTIRLWDAT
VPWGSNAAVAKRTKSQSDPGASRERPRVEGELLAVLAEGGHEKAVFSCDFHAVQPLLVSS
GADGFIKIWRIPANILAATPHWPSTPLYRPPTSPPPPSNAPILGPPIFSSYAVHPGQWPD
QVSFLSASSCTILSKAAVSHPSSRFSPRTSVKIWVPTILDVLPDAKAEKRRAEVERSRSE
AFQADPKQVPRHTGERPSLPIDARSESGFRITCEAVLDAQNCIGDTVGIYRRPQTLEEGA
GPADVLFVVPTATRMPLVDGTDGGQGDPALYFFRPFALPTSPASSNSPSESQRSASVGDG
RPASKDSLDQLAKTLFPPDRDRLAHDFTPRLLPSAVLDIFTQSQRQSNAPLPQIHFRCIA
VQPNGAASIVGVGDGGLVSVWKRQRRGK