Protein Info for mRNA_8428 in Rhodosporidium toruloides IFO0880

Name: 16796
Annotation: KOG3808 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 77 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 59 to 76 (18 residues), see Phobius details PF06842: DUF1242" amino acids 16 to 50 (35 residues), 65 bits, see alignment E=2.2e-22

Best Hits

Swiss-Prot: 68% identical to KISHA_HUMAN: Protein kish-A (TMEM167A) from Homo sapiens

KEGG orthology group: None (inferred from 70% identity to spu:593851)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (77 amino acids)

>mRNA_8428 KOG3808 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MMLSRQMTAIFNFESLLLVILLVICTCTYVRATAPGLIDRNKQGVLGIFFKFARIGERLS
PYVALACVVMAVRSLVV