Protein Info for mRNA_8439 in Rhodosporidium toruloides IFO0880

Name: 16807
Annotation: KOG4162 Predicted calmodulin-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1046 PF12895: ANAPC3" amino acids 579 to 657 (79 residues), 29.7 bits, see alignment 2.5e-10 PF13181: TPR_8" amino acids 891 to 923 (33 residues), 18.9 bits, see alignment (E = 5.2e-07)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1046 amino acids)

>mRNA_8439 KOG4162 Predicted calmodulin-binding protein (Rhodosporidium toruloides IFO0880)
MAPARTHAASTATPKGQRWADTLDHARRLALFSHPHPGLAKGGVNTAAIGQAELKNAAAA
VDAGGASAGQGAAGGQGADAKAQGFAEWKEVLRKFRKHNPTREVTASAANADQITHALLA
KVLARSPPSPAIDIDAVPPLPPFIPAHDRPPALTALETLQNSLRNVGGASQIEVDSARIV
LAQGRFAVGEPQEALAVLRQVEYRNVPHVNEAEGYDLTLRVVLSLVEGYALESLGEREPA
LSAYENASQVYQQAVDELARSPGGDKDDISLHRAGGAALFRLSLLSRIMPSSSLSTSYSA
HQRYLHRSASFARAPLAFPAYQRLPIHRSFRSLQVLLNRHDAALTAQNDKAEERLIREST
SLPKAGETNRVYLKFLDEVVEGWRRRGARKDEAGDVIEILYNALTHTFQSQLLLRHLIRA
LTVAGRYDEASKALALYRELWDKARETDAKEVAREMKKLRAKASAQEMGEKGEKEGLVNG
HGAHELDDAVDVDPYATDIDADAVFIDTLIYGVRLLCKFVDRPKVAVELAKRAREVFDEG
RDERLKEYKVLEARIERTLGVALGALAAKEANPAHRPTQHSDALQHLSNAVALDPSSHLS
FYSLAYQLLELRQVSPALDAAHQAVQLNKQSKEAWHLLALCVSAQKDMQGALEVLETALD
IDGATEDDDTAETLNGDANRPNGHARGARSLVVQDQWDSPTDEVEQLATEMQLRLSKNTV
VEYLEGAAAALSDQQDVLAYFSAAYPHIAITSPVANGGAAQSRSRTAAGGDLAPPVPNVG
GGTVSRAASIVSRRKSVKRQSQAVHGAPIPPALASDSLNGSMANLSVNGDASPAQSTGSA
GRPSAVPSPRATKLLVDAWLASAASFRRAGKLDEAKGAIGEAEKLDPEDPDVWAQLALLF
LTLGEKGKARDTLMKALSFNPQHPPSLVVFSRLYLTPPDESSSTPTVYAAAPPPPPSHLT
SPNPASSETSSPEKSWIALQLPLAESMLDTLTQHAGWDSPEAWFELSKCYKLTDRKAREK
ECLVWALQLEETRPVRNLQKAVQRCL