Protein Info for mRNA_8441 in Rhodosporidium toruloides IFO0880

Name: 16809
Annotation: K09274 K09274 HMG box factor, other

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 961 PF00505: HMG_box" amino acids 368 to 437 (70 residues), 45.1 bits, see alignment 5.5e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (961 amino acids)

>mRNA_8441 K09274 K09274 HMG box factor, other (Rhodosporidium toruloides IFO0880)
MTEAQYPSSPPSSISLPEHWRFVPPPTDGPNTRARLAEGRKPISGTTAPLPARLAARGPA
GGMEGRGVEDWAEWTGEGEPQYWYTAGPSTAAGSTYYAIDPSLDFDPSALASHPLTAPPT
TDLHRSFTSSGPALFRPPSPVREDRRLFSTTTVIDHGSPPASPSLNAEGAVGSVQYLPIY
DDQLSVDPLDGPYAGLPTPELPVPPSAFQTAESLTLYAGETSLSCSGSRSAVPSVSAHHP
QTPSIFRLPPPPASAPPASKYSVPPLPPPPPGYPPHRPEQHGEFDASRPPTRSKRRQAPS
PLDSLRPRPSPYPTASFPPGVPTYREPVLTPVSHALQIYKEYPVPDRPPPISEFPKKSHG
RRTSVGHIPRPRNAFILFRSHAVSSGLIPRSIGIRDHSNISKIVGSVWRGLSDEERARWE
ELAEEEKRMHKERYPDYVYKPKKRETAAKPKPTLDEADEYAAAGTSHAVEGDIPVNDDEF
VPAQQPKRKRGNSVRQTRPTPKKPATAADLERQHRKMELIGQAVLEGEDEEKIMARVEQE
LAQQDKVASSSSPNKATRRSSPIKATSQPSSTPRKTRSTIHQRLKAESSSPDPSLQRFAS
PASSSSSFSPTPTRQKQYSSGRGQAASPASSASPSPQRMQQPLRRSAASPPSASRHPLSR
SHGASGESVEYDLPASRRNKTSSYAAAGLGVGSSSMAMALPPTPASTAGPSPQPDQRHGA
PSPSYAFPNASIDAPLFAGAADSRQFSLGKWELRKPSSAIPSRREQLAQLQEEHFTTTSL
GSTSGWLDEKAEAAGQAAGRISSALALDPKEFLVESGLEDDDAFDALTEYGTAASSASYP
VGGWARSGASDYETAPSTAPPTSQRMSDQDIFKQPLFRQPSSSTQASTSFGENGGGLDDL
FHFGEVDLFSQPPPALFPTSGVSGGQGIFGGADRTISSTFGFEGGLGISLDGDGEGTVRR
R