Protein Info for mRNA_8480 in Rhodosporidium toruloides IFO0880

Name: 16848
Annotation: KOG2174 Leptin receptor gene-related protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 132 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 35 to 35 (1 residues), see Phobius details amino acids 38 to 54 (17 residues), see Phobius details amino acids 74 to 93 (20 residues), see Phobius details amino acids 102 to 127 (26 residues), see Phobius details PF04133: Vps55" amino acids 11 to 126 (116 residues), 134.6 bits, see alignment E=8.1e-44

Best Hits

Swiss-Prot: 42% identical to VPS55_SCHPO: Vacuolar protein sorting-associated protein 55 (vps55) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: None (inferred from 56% identity to cne:CNI01680)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (132 amino acids)

>mRNA_8480 KOG2174 Leptin receptor gene-related protein (Rhodosporidium toruloides IFO0880)
MADSRAGLKTIIFLSFVLSLSFLLIILACALWSNWLPLLTAILFAFAPLPNWLCSRCAGA
DDFSADYSSGPLDFGHFLTSCFLVSGVALPYVLAHSEVIHPVAAWMSALGGMVGYGTIIT
YSHFFAIRIEEF