Protein Info for mRNA_8486 in Rhodosporidium toruloides IFO0880

Name: 16854
Annotation: KOG1162 Predicted small molecule transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 608 transmembrane" amino acids 27 to 47 (21 residues), see Phobius details amino acids 102 to 120 (19 residues), see Phobius details amino acids 139 to 157 (19 residues), see Phobius details amino acids 202 to 217 (16 residues), see Phobius details amino acids 268 to 280 (13 residues), see Phobius details amino acids 306 to 325 (20 residues), see Phobius details amino acids 466 to 466 (1 residues), see Phobius details amino acids 471 to 488 (18 residues), see Phobius details PF03124: EXS" amino acids 24 to 530 (507 residues), 370.5 bits, see alignment E=4.7e-115

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (608 amino acids)

>mRNA_8486 KOG1162 Predicted small molecule transporter (Rhodosporidium toruloides IFO0880)
MDIDSPPLDASLPTDALSAFGLRYPLPFRILFLSSLTVLGFASNLHILSHLGIDTALVLD
VRLDAPPSTLPRTVPLSSPSGSTPSSTAHPPFVHPSGLYPPLYSLALAGLGWTAAGWLFF
RLLTGGDPAEGERWRVEPAALLVLAAAAICWPGNALCRRERFRFLRSIRRIVSPSLNAAV
PFSDIILADILTSSAKVLGDVWVAGCILFEGGAVGTAGLSIGDACKRVWGVPFMTSLPYL
FRFRQCLSEVYTRSTPTPRRSLLNALKYATAFPVIIFSAMQTVIGDPFDPDEEAHEAGER
WIGRTTLFNLWILAVLVNSLYSFWWDVTNDWGLSLLTKPGWSSSPSVSYAFINPPSSSGG
HASHRSPTSRGLAGSQQHHRARSNTPNGLLGPPGLANGDDGSSLSTTFPPPPSRPQSPLP
KPGTASATLAVPSTSGSPGSRRTHHMRAFSTASSPNLSYPFLRPILLLPDPLIYYLFILL
DLLLRLTWSLKLSSHLHSVQEVEAGVFVVELMEVVRRWMWCYLRIEWEAVRKGAGSEVVS
HHAPSAPGGVSWLEKDEGEARLRMQEEYELALRGGGGAGAGPSGLGGVAAPLLGDVKGAG
GPREGELV