Protein Info for mRNA_1 in Rhodosporidium toruloides IFO0880

Name: 8369
Annotation: K12198 CHMP5, VPS60 charged multivesicular body protein 5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 211 PF03357: Snf7" amino acids 12 to 195 (184 residues), 144.9 bits, see alignment E=9.7e-47

Best Hits

Swiss-Prot: 43% identical to VP602_ARATH: Vacuolar protein sorting-associated protein 60.2 (VPS60-2) from Arabidopsis thaliana

KEGG orthology group: K12198, charged multivesicular body protein 5 (inferred from 68% identity to uma:UM05282.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (211 amino acids)

>mRNA_1 K12198 CHMP5, VPS60 charged multivesicular body protein 5 (Rhodosporidium toruloides IFO0880)
MNRLFGSSSSKPKPSLADAIASTDLRVDSIEVKIRKLDAELTKYRDQLKKMRDGPGKNAV
QQRALRVLKQKKLYESQIAQLQQQSFNMEQASMTTENLRNTMATVDAMKTANKEMKKQYG
KIDIDEIEAMHDDMADLLDSANDVQEAMSRTYGVPEEVDEADLEAGAFGHFEEEEGIPSY
LQADATSELPDFVDEAPQKEEVRQARTSVPT