Protein Info for mRNA_16 in Rhodosporidium toruloides IFO0880

Name: 8384
Annotation: K03407 cheA two-component system, chemotaxis family, sensor kinase CheA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1197 TIGR00229: PAS domain S-box protein" amino acids 505 to 614 (110 residues), 36.5 bits, see alignment E=2.4e-13 PF08447: PAS_3" amino acids 522 to 588 (67 residues), 29.8 bits, see alignment 9e-11 PF02518: HATPase_c" amino acids 790 to 923 (134 residues), 73.8 bits, see alignment E=2.5e-24 PF00072: Response_reg" amino acids 975 to 1094 (120 residues), 84.8 bits, see alignment E=7.3e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1197 amino acids)

>mRNA_16 K03407 cheA two-component system, chemotaxis family, sensor kinase CheA (Rhodosporidium toruloides IFO0880)
MHPPLPRLAIPPPHRSSTTATPDECMGADYPLLHTYLADQPLPASIYSHDALLASPPNSL
PPSTWDNPALRVFLRQGDRRKGDVGRDEQTLTDSLDERERARLRAWLVQGIEAGTTGGSS
LASPLAAMSLAPSPLRPALSTTYSAPSVYAPSSSSSSRPSNRSSSISSSSTSLTSSSLTT
AAFRNRHIALQLAHGINFSKTWWRATVLRGVTVLTQLPPSNVANGGLGLDEEEEDEEEEM
FEEALEQASDEGASDDEEEAETTETEVDRAGTGDETEVPSPIRADSSSDSHPLRPGIPAF
MPSYTSLPRRSATDLRSSSPTPSEPKSEPDKFPLSVHLARRKLGRRTTQERVGDFHVSLE
GARDATSLEGMAVTLWDAPVGIFRCNRDLSITQANPKWRATCNIAEGETNDAWPSRIHPS
DRDRVVTHYLRIASQLPLERDELEFRWLPEGGKDQWCRCVIEPVVIDGRMEGYTGMLLNI
NKHKAAETASSLREQLLRNELAVLSETTSTGLVKIDLSGHFVSANRSWYRLVGIEEGRVL
DEWMENMHEEDAEWVKKSWAEHLESREPFTARFRWKWGDYCLVQAVLNNANKQHATGWIA
SVTNVTAQARAEEAILNVSKEREARAKAEAEEAEERRKVAVEEKRQQELLIDVTSHEIRN
PISAILQNSDFTRSSLQKLRDTLLTLQQRNALPSELADSTLNDLDEDIEALDAITECGMA
QERIANDILGLAQIQLSKYNITPVEFDLATSLRNICRMFKTECRMKDIELKLVIGSSLAR
LGPRARVFADPARLTQVLVNLLSNAIRFTAKSPTRVVTLAVEVSAQPPDRDAPLIPPHEV
EYHIEQRKPVYLFFSVEDSGPGMTEEETSRLFAKFMQASPFTHTTWGGSGLGLWIARNLC
ELQAGRIEVASTVGKGSIFRCFITARSVDTGPHATDRPLAVVEGITGPNAERGAAPRVFL
STTGKEEQPLKGVVVLCCEDNQINRTVLRKQLQKEGCEVLLACDGQEGLDILNERPAGQV
DCILMDIEMPVMDGLAATKAIRQAEREGKRAGHQRIVGLTGNARNAQRQAAIDAGMDTVI
TKPYKVPDLVAKIRADVPDSEPGSPMRASSPGNAVNGTYTAEDRKGETVTHLSSGADVEV
ISPGSPTSSPSYEDSPKPNESGSRSSDEGATESMLHHGSGMVFPASHPEGRSLEREV