Protein Info for mRNA_20 in Rhodosporidium toruloides IFO0880

Name: 8388
Annotation: KOG0519 Sensory transduction histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1139 TIGR00229: PAS domain S-box protein" amino acids 326 to 437 (112 residues), 29.9 bits, see alignment E=2.6e-11 amino acids 459 to 564 (106 residues), 29.4 bits, see alignment E=3.9e-11 PF13426: PAS_9" amino acids 329 to 431 (103 residues), 17 bits, see alignment E=1.8e-06 amino acids 468 to 557 (90 residues), 18.2 bits, see alignment E=7.6e-07 PF08447: PAS_3" amino acids 472 to 525 (54 residues), 36.6 bits, see alignment 1.4e-12 PF02518: HATPase_c" amino acids 740 to 873 (134 residues), 78.2 bits, see alignment E=2.1e-25 PF00072: Response_reg" amino acids 925 to 1044 (120 residues), 81.5 bits, see alignment E=1.5e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1139 amino acids)

>mRNA_20 KOG0519 Sensory transduction histidine kinase (Rhodosporidium toruloides IFO0880)
MLSGQPAPSQDAGMSSFLSDLDPRQLVDYLSDSPLPVCIFAHSQLVHQPHAHPHAPPSTL
PPPVFQNAALDSLLAQRSATPAIGTVLGGTGTFGANGARARKVEFPDAMAAKTRQRLRDW
LADGAKVASGGPPAPPTRVMSPSPLRPAGTSRSRPSSPAPRPPPAPLSRRSSSSSSSSTS
TTRQISLQLHRTISMSKLRWRATVYDEGYTVLTLLPALQVAQGRSMSVEQGTSSTNGTVR
IDEEDESPTQARFSAAQVALPKRDSHDGAKVTSPIEAVFPLANRPRSNSLVQRSRDVEML
GEIEVLSDKAMDATALEGLAWSAWNLPVGLFRADTDFRLLQTNPMWRKLCGLPEGHTNDA
WPSRIHADDRARVVQHYIDIVEKLPRERDEYEFRWLPDSKGQEQWCVCVLSPAIRSNGEL
SGYLGVLTNINKHKAIESPSERREAQLQTELAILSDTCAVGLSRHELDGTFISVNPAWYE
VTGVDPSQPVETWRDRIHPDEQEKIFKAWDHALANRENLTLQFRWETGRVSLVQVVLNHR
EKEKATGWIGSVIDITAQARAEEAILNLSKEREAMAKAEATESEERRKVAVEEKRQQELL
IDVTSHEIRNPISAILQNSDFTRSSLQSLRETLISLRSRGALPPELDGEILHDLEEDIEA
LDAITECGLAQERIANDILALAQIQLSKYSVTPIDFDLATSLRNICRMFKSECRTKGIEL
KLIIGSSLARLGSRARVFADPARLTQIIVNLLSNAIRFTAKSQVRIVTLRVEVSGVPPEP
NAPLIPPHETEYHIEEKRPIHLFFSVEDTGPGMTEEETSRLFAKFMQASPFTHTTWGGSG
LGLWIARNLCELQGGRIEVASTVGKGSIFRCFITARSVEAGPTTDERALSVVKGITGPNV
ERGQTPKVFLRQGEKDEKPLSGMTVLCCEDNQINRTVLRRQLQKEGCDEVLLAVDGKEGL
DILNARPAGQVDCILMDIEMPVMDGLAATRAIRQAELDGTRAGHQRIIGLTGNARSAQRH
SALEAGMDAVVTKPYKLPDLVAKICSTPGTDSPATPLTPPALDSASPLFSPHSPHAVTYA
VSASQTFSATHASADASLAGLSTTAFSYSPRATATRSLMRDFREVMSLEEMTITAKEGT