Protein Info for mRNA_36 in Rhodosporidium toruloides IFO0880

Name: 8404
Annotation: K00694 bcsA cellulose synthase (UDP-forming)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1183 transmembrane" amino acids 570 to 588 (19 residues), see Phobius details amino acids 608 to 632 (25 residues), see Phobius details amino acids 926 to 954 (29 residues), see Phobius details amino acids 995 to 1014 (20 residues), see Phobius details amino acids 1047 to 1072 (26 residues), see Phobius details amino acids 1093 to 1118 (26 residues), see Phobius details amino acids 1159 to 1179 (21 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1183 amino acids)

>mRNA_36 K00694 bcsA cellulose synthase (UDP-forming) (Rhodosporidium toruloides IFO0880)
MPPKSYQRPKNPPRYHSADSLPPPRSTSPIPPVPPMPPCTPPPRMSSPAARTGSPTESVG
SSPSRGGANRTSRKPVPVYNADELHEPRLPSDRPRPTNPNPFAAANALIAQQQGVPDEPR
TPPRPARPVTPQHKVRRSSDEDELSPTDRGERAFSRGSTSPTSTPPHTPVRIKRDASAER
APPVPTPQEEDDIATLNFNRRPSQFDPLAPSFHHAHGGSSTGSRQLVSATGFAPLPPVSP
LRQPGQAHKRQRSSHTRQPSISLSSPSASPSTGGGFDNSTGASSATSTNVQYYGPSTLPP
TESRKILPLQPVAQRNNGSVPPTRAPIEAFASVEMLQGQREHQDRTRGTEVFGPGGTYEG
RASSLSGEAGLPPYSRRQDPLAAVHAARNPAAAGAAVAASQYSLGSQLPPLEMDVMSIAS
QLREHDKARRGSEDVRGDWPRLFSEASSGEDESPPPTAGGMHLNPTFSFPSKDSLKSSSH
STLAPAYDGPGSAFDDDEHKYPPDLKKIFNFSKRHDEKTTGGWRTEHLGASDKAFTMQRP
SIVALPVYPSPGGTLSKSFKTRAKKWGTKLAWLTVLLACASSWVYLYFRYNAMKLVERKR
PGIFVGGWCYLALETVVALMTTVHSLWVVYNYRARSAEPKMRLRGDNNLPSVDVFIVSSG
QADQTVFDCAVAAASMDYPPHRYRVMVLDPTASSNLERELQRHAKAQACPHLTYHRRDVG
AKEEKNMESLAKKANSTENKVTKANAINFGMHEASTFGIKGPAEFIAVFDADMLPERNYL
RAVLPHILGENKVGLVKTRHGFINLPHRLSQPTATLLTASETPADTRSGFLLRRAAVTEI
GGFPADSWIHDGQCEALLQGRGYKVRQVEEVLQWGMAKPTYTSQISAMMVNRLGPLRTAH
RLGWFVRGNKTKLMPFAAKVKAIGRALLPIFSLICIILAYVYPFMFSFGGILVLTPSLSN
LNRMLQVTLIMILLHKLHEVVWCWSTGLPSPRRAFQAWIFAAPYQGFALLRLILPRWLGG
YKQRTSDIDINEVITHPIRDPWYKRLGWFVLDPLVSTMFAFLGALGIAIWRIVKDYERGT
VDEHQTALTVLLTIAWPTLLWSEFLFASFVPFVCLLFPSRLLTEPRESFLIRDHYSHVAR
PKHHFKTAPPFKVHRAPEFVTGTIVVAWAIVCVCVAKLTDVLA