Protein Info for mRNA_46 in Rhodosporidium toruloides IFO0880

Name: 8414
Annotation: HMMPfam-Protein of unknown function (DUF3292)-PF11696

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 959 transmembrane" amino acids 341 to 358 (18 residues), see Phobius details amino acids 377 to 399 (23 residues), see Phobius details amino acids 405 to 422 (18 residues), see Phobius details amino acids 611 to 628 (18 residues), see Phobius details amino acids 634 to 653 (20 residues), see Phobius details PF11696: DUF3292" amino acids 280 to 893 (614 residues), 257.8 bits, see alignment E=1.1e-80

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (959 amino acids)

>mRNA_46 HMMPfam-Protein of unknown function (DUF3292)-PF11696 (Rhodosporidium toruloides IFO0880)
MADPQEGAKLAPPIDYSNLSSTPITTHSHSHETEHRSADADKAAVVDLVTGQGSHGANTA
GAGAGGDMPAELVDSPAPASAHPEPSSAPPPPPKYDEPIAVDTAKTSTALSSADKAPLPT
AEPAPPASSTVSSADAAPRPAVEAAPVQHDAAPQRAVAHEASAADLAAKGHTSGGSETSA
VVTDSSVARPPTRTDVPVEGMRETGHVESAPPATSKPIVPSAESHLADHPATSTDAEHVL
PLGSDVHPVHQAAALAEAPDHLVNAQVEKHKADRREVFGEEPQGTIVPGLEDDKLWAMIR
RFDVQISHTLTPPTKLPRGEPDLRPSTLPAVPFNSDTLKSNLMRVYATLGIWTIYGAREV
MRLMSWSPENRRRTTVWCVAYFVCAALRMVLPAFFLLLVRSSPPSLGNLLTLAIPQATLI
AYPPSRKYLFPPIPPPPGQPPSATDPTNQKGDESMIAGVGHPIEHRSRAEQVEQQAWEFT
NLVQRFGARVVVGGKAGGKQGNAEVGRKQHVSSDEGEDSELDDEEQELHRVAEEEGLGVA
ADKERREKSLSDKERRKQKAKEAKIKRDAAIGNAAKQAQDILGNIADIAEVFANALAPPK
PYPPYKAREKLAYQVLAPIALVFAVVPAKVWSMAASFGFGIAFFGQPLLIRAFELLQEKV
PDWQEKIDLRNTLFSGVPTNAQLVLHVIRVAERAYTPFPLPPPAPTAEHMKEAVQSGGFD
ADEMGADGYSAEDSEQHSVEAGALANKEADGGETDKSGASAVDKVANQSKHKIVGAFKKV
AKKAAVFRGDVHVEGESSAKQKVGNKIDRLLYQSRAKDDMTPTSFPAKFNGTSGHIIVKH
SPSQATSTVSFIPLKASFSHPTFERPIEDIVEMKKHGVWIGRTALGWAASINLQGMGLDV
RFKTLEERYAEKAHGGLGEGDKPHQEVTHGETMTFSHVARRDELFRRLLAISNARWEVL