Protein Info for mRNA_49 in Rhodosporidium toruloides IFO0880

Name: 8417
Annotation: K03133 TAF9B, TAF9 transcription initiation factor TFIID subunit 9B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 224 PF02291: TFIID-31kDa" amino acids 12 to 134 (123 residues), 124.3 bits, see alignment E=1.6e-40

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (224 amino acids)

>mRNA_49 K03133 TAF9B, TAF9 transcription initiation factor TFIID subunit 9B (Rhodosporidium toruloides IFO0880)
MPPQPPQTSQPVLPRDARLIALILAAAGAEDCEEGVVRMLVEFAHRYTSDVLTDSLLYAE
HARVGSTSTAPVVPSVEDVRLAVQARTEGAQVPKEFLLQLATTVNSVPLPPVPEVYGIRL
PPPAQRLTAPNFSIVPRSAGPPAPPGAEGDLDALAAFDAGHGTNGDGTATAEGSEGIGGG
LFGDDDDDDDADMEEIEAGLMGTNGSSSSGGGVKRRAEDDEDYD