Protein Info for mRNA_51 in Rhodosporidium toruloides IFO0880

Name: 8419
Annotation: K10392 KIF1 kinesin family member 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1628 PF16796: Microtub_bd" amino acids 7 to 170 (164 residues), 76.7 bits, see alignment E=6.8e-25 PF00225: Kinesin" amino acids 14 to 364 (351 residues), 370 bits, see alignment E=3.5e-114 PF16183: Kinesin_assoc" amino acids 433 to 519 (87 residues), 103.5 bits, see alignment 5.7e-33 PF12423: KIF1B" amino acids 962 to 995 (34 residues), 27.5 bits, see alignment (E = 1.2e-09) PF12473: DUF3694" amino acids 1211 to 1358 (148 residues), 121.9 bits, see alignment E=1.4e-38 PF00169: PH" amino acids 1531 to 1623 (93 residues), 51.3 bits, see alignment 5.1e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1628 amino acids)

>mRNA_51 K10392 KIF1 kinesin family member 1 (Rhodosporidium toruloides IFO0880)
MSAAGGGNIKVVVRCRPLNAREIARGAKSLVRMEGNNTFLDPPEAANVTSGRVTEKETKS
FAFDRSYWSACPKDDPSYASQQTLYDDLGRDLLDHAFEGFNCCIFAYGQTGSGKSYSMMG
YGADRGIIPLICEALFERIKAKTQDGDGKVSFNVEVSYTEIYQEKVRDLLNPLNKGNLKV
REHPTLGPYVENLSKCAVQTFEDIEHLMDEGTKARTVAATQMNETSSRSHAVFTLLLTQK
RHDPETNMTGEKVSRISLVDLAGSERANSTGATGQTLKEGANINKSLTTLGRVIAALAQA
SAAKGGKAQKQAQDKVPYRDSVLTWLLKDSLGGNSKTAMIAAISPADYEETLSTLRYADQ
AKKIKNKAVVNEDPNAKLIRELKEELQTLRARMGISGPTSSLSSAAAVESTFDPSVPPEK
QIVQYRSATGELKTITKAELQDQLEASEKLMASVTETWEQKLQKTKEVEKEREKALESLG
ITIEKNHVGVHAPKKMPHLVNLSEDPLMSECLVYQIKPGRTTARPSLIHAQLISLILRSQ
VGNMESEAPADIKLSGANIFDDHCFFDNAADGKVTLHAGAKGIVMVNGLRISPSKPKELR
SGYRIILGDFHVFRFNHPEEVRKAREGKVRQELRSPLIDSYEDSGVSSPATRPDSPMSNA
DWAFARREAVVARLNGKDVNLDQMTDNDLNRLYSSILRVKHSRTASSVAGSDRPESRMSF
LDSVTEDGDDDDEDSSDFRSRPYWGGTWTTDPTSLADSTLTLHHLPDLEEKGFGLDDAPL
PTPLASTAQPPAIVVAEAEKEKRSMEEKVKKLEAQMAAQRKRIAKLRSNGSGATNGSRTD
ELDDLFDEWPRMTPEQEVLARKVVTAWRRRRRIRMAEDALAHAVVLKEANVLSRELNKGV
AYQLVILERDVLLSSASERIDGLEDVDEVVDPTLASCAKPCVAVKVLDRRHQVLSIWSLA
KLEQRLQQMRNQYKWLDKPEYRQHFASQDPFYESPSPAGGYSLVGTALASLAPLSRGLPS
TQTIQVYSPYIADPIGSCRLRLTPLTQSNGHTDDATLSVHVEVDGVVGFDKTEFAALHLQ
VSTSTLFGTKTEHDVAVSSQPVDLDQQDLVDLRLAQTFELELTPHVQRHLHESHAQVFLF
GRARLPHFDRIERWDEAREAASISKAKDAVAVRGDPANDDVTRRPENDFINEQQHDILAH
IEIRELGERGEYEPVQVVSTNALDAGSFFLRQGIQRRFVLELLSNSGRAFPWKRVSRVSL
GNVRMLDGQGRVHAATSAADAELRGMGNPRPLFSSDGTSTLSFAAAWDSSVHDSTHLNRA
TPQGSRALVRLSFDIEVTGCASPVAFSTDFAVTIAGRDARPPSKLLSLFNSNRLASRIAA
VFAVNLRPYKTRKAGDVWRLDTSDMFVRGEELLAGWRPRGLTLIRDYDSVAPVKRLAVDV
EGTKSILAALDTALPTVEDGHPDERLGSVLALWQRQFGPRGEIPLEREHAASKMLDLASP
APSPSLSAPTPNSPKLTGSASLIPRAEAANKRGPLAILRDPTSNQWRKHWFVLRRPYLYL
YNSSAEVDEVAVINVSTVRVEQSPEIERMLERKFAFAIFTHQNSYFFAAPSLRDMISWMK
AIDPSLAA