Protein Info for mRNA_54 in Rhodosporidium toruloides IFO0880

Name: 8422
Annotation: KOG1505 Lysophosphatidic acid acyltransferase LPAAT and related acyltransferases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 transmembrane" amino acids 21 to 50 (30 residues), see Phobius details amino acids 129 to 149 (21 residues), see Phobius details amino acids 372 to 396 (25 residues), see Phobius details PF01553: Acyltransferase" amino acids 114 to 262 (149 residues), 54 bits, see alignment E=1.4e-18 PF16076: Acyltransf_C" amino acids 319 to 360 (42 residues), 27 bits, see alignment 4e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (398 amino acids)

>mRNA_54 KOG1505 Lysophosphatidic acid acyltransferase LPAAT and related acyltransferases (Rhodosporidium toruloides IFO0880)
MTSLHAVPIKQRPPPSMQTRLHLIAFNTLFGASLILMHTFQLFTLFLLLVPHPSVRALYT
ALNTHAKEAFASDLIFITHFFGPAKLVVTADESVNLDELVRRNEKGEVIGFRLAEHAVWM
SNHQMYADWIYPWILQSFAGVSSGLIIILKASLEWAPIVGPAMQLFHFCFISKTKTLAKS
NLFRVAKEARDQDEPCHCLLFPEGTLYSRLTRPRSAKYAQASGIPDAVNVLLPRSTGLLY
TLRCLSTVFSPTKLAFYDLTVGYAGVPAQGYAQDYYTLQTIYGHRVPPPTVHMHFRQIRL
DDLPLGTIRPSARPQHIAEEVTSETKQEFDVWLRNRWEEKDRLMGQFGATGEFEAGKQGK
VEFDIRMRRQDWVTLGSVYVGLAIWIALAVKVVRFVWR