Protein Info for mRNA_57 in Rhodosporidium toruloides IFO0880

Name: 8425
Annotation: K15176 CTR9 RNA polymerase-associated protein CTR9

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1222 PF13432: TPR_16" amino acids 201 to 254 (54 residues), 22 bits, see alignment (E = 8.6e-08) PF13181: TPR_8" amino acids 878 to 906 (29 residues), 15.6 bits, see alignment (E = 6.1e-06)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1222 amino acids)

>mRNA_57 K15176 CTR9 RNA polymerase-associated protein CTR9 (Rhodosporidium toruloides IFO0880)
MDANFDCADANGAAGAGQASAAFEVPLASSNEVIPVSLDDVFSADTEDKVHELLTEVVGL
LTTEQAATKFWVRLIEECWRQKRWAQALELADTALRAVPHRPGYQPLDLVPLYCLKANFN
LALARRAPKQRLEDNRTGPISFPRDPHHPEFVRPGMQPSPTGPMLKTEYVIRAGMDISEA
ERIDPNNKVVLDIKAAWCMVSGAFDQARQNFEQILREEPTNLMALMGRARIQFSQRAFRP
ALKTYQEVLRLAPNFLPDPRIGIGLCFWMLGDREKARKAWERSMQVNPNSSSPSAPLLLG
LLHLNASKDPLLPGGPASRSAAYERGLTLIQAAFKKDNTSAGAAAMSPIASHLLLQGGPL
AAQNALKLAERMLSFADARLLVAEAHLARARALDADPSTAEFGGALILQSYQRAIEANPD
LVMAHLGAGAMCVRMDQHPQAIFAFETLLRRHPKCIEALVCLASIHTHLAFTFHAVSDAS
GARKSAKEAYEQVLRVFATGKEAVGSGEGGGDRGIAKSERVRVLAEDRDLFIEIAKLWSD
ELSVERSLQAYQQAARIEADKAEADREEREMKAEDDLYATQQSQEDAGPDAVDPRIRNNI
GVLLFNRRPLSSSSATNGSNSHLIRAQEHFEAALQKAGEMFGKAGGVLNGGELDAVLTTC
TYNLSACYEALGELDKARSGWEQLLSGHREYVDAKARLALLGLKSRSEWDNAHELIKQAL
TSSPQNAELRALYIYFLFETGAYANARDFARATLKEVSRHDVYALCASGLLCYFEARENK
KQGKEAQRDRVAKLSRAAEFYDKALQLQPQCAFAAQGLAIGIAEGTLGNGPTEANGAAAN
LAAPGQPAQPLTEHQARLRNARDALGVLAKVKESVNEASVYVNIGHCHFARGEYDKAIEN
YATASRRYLNNKSSTVLWYLSRAYYHKSVREQNFSDLQHAIEVGQQATDLYPKDLANLFN
MAVLKQKGVEILYALPAEKRTSAELHAAFEHLQASNALFDELAADQTQVPPYEKEVPRQR
RSYGRSLESRFQSILETQQAYEETEQGKLEQARRLREAEQKKREEAEAERLAQIQRQAEA
LAEQRRRMREEAEQWAAMSKEWADSDDEDGKKKRGGGGGKKRKSTKMKGGDDEGLAETTD
SEGEVDKPAKKKRAKKEKKEKASKKGKGKAAADGEGSGRMAVDEQYDEDGEEMPVKAPRR
RKGKSSGQVKSAEFIEDSDEDE