Protein Info for mRNA_62 in Rhodosporidium toruloides IFO0880

Name: 8430
Annotation: HMMPfam-HPP family-PF04982

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 transmembrane" amino acids 121 to 141 (21 residues), see Phobius details amino acids 152 to 169 (18 residues), see Phobius details amino acids 181 to 200 (20 residues), see Phobius details amino acids 211 to 231 (21 residues), see Phobius details amino acids 256 to 276 (21 residues), see Phobius details PF04982: HPP" amino acids 157 to 285 (129 residues), 131.5 bits, see alignment E=9.9e-43

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (303 amino acids)

>mRNA_62 HMMPfam-HPP family-PF04982 (Rhodosporidium toruloides IFO0880)
MVGGEPSHADPAHSTKDSWLDRGWPLTRFLGYRPPPPHPHAAKDVSSHADHFLPTPMREK
RRAKAQDKYEREHGMVDEGGMRRSESGTVVGSPDGSAAEKGKGQSEEQKQPSVGEKVRAK
LWNMLLTLFGCFFGIAFGALGGRAPYIRRHNGPIIPAAFGAEAVLLYAAHSSPLTQPRNV
IFGNTISAILGVCVAKLFLLHPGFKVGDAFGINWAACAISLALSLGVMQLLEITHPPGGA
TALLAVSVPQVSGMGWWYVPQILQTSLILLGWAMIMNNLGGRRYPSELRAVSLVEREEGR
EKC