Protein Info for mRNA_74 in Rhodosporidium toruloides IFO0880

Name: 8442
Annotation: KOG3600 Thyroid hormone receptor-associated protein complex, subunit TRAP240

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1990 PF06333: Med13_C" amino acids 1682 to 1864 (183 residues), 87.5 bits, see alignment E=5.5e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1990 amino acids)

>mRNA_74 KOG3600 Thyroid hormone receptor-associated protein complex, subunit TRAP240 (Rhodosporidium toruloides IFO0880)
MSRPPPLHPSLPPRPATTLSSAPSRTGGAAGSGGQGAGTSGGSHPSSPATPLTLPARPAF
VPTPTHPTSAKSGLSAGYSAGPASAGGLYGSPGTANSMSGPSGSPRAGTFASTSSFASSS
DPSASTSNPFSTIRPRISASQARTNAQLIELGEGWVVEYRAWKGPALFVEGEGLKEGRMD
YDPLRPPLGSVSPFPMSSSSSSSGKRAAKDKDGDASGPPAPKKAKRRSSAMNTNSKGSNA
FDDLIAEELGTSTSSSIPSPSLSASAPFLGATTPSLPASPMQLSTSSSGTTHRVPAALKK
AQAAAAAAAAVSTPAAPTPPPASTDAPAVDHLASPPSAPTDSSSSTQALRGRLAPLSNPD
FLANDPILRAERDLRRREKARADEGKDRMSLLWLTERKAVQLGRAEKAEDGGKGKGKEAE
DAKEKRKEQEKEDLVDAAEGEGRLLWVFCVVRGPDSVGFDDGKEAAADLDGMSFEGLEVF
ASGKLTHASLFPDLYSLPPGSATPSFTPPLSLPARSYPSALALSAQTYTVPSAATPLPSL
TAKQAAYSAFRSTISSLLLDELVQLGAPETRPLHLADSVVYLPRPPSPASKESTLSLARP
PAIKVSIPPPSLNQSAIFVLSSVSELSYTVPTCDLSPDTPLLLAPVDLPATLVRPLTRLS
PAHLARLASDWRGELDRACVPDEERGDYLLCALDLPDSPRAQDRIEVIWPRALVIVDESR
KPQHDDRAPPQAAPATPHETHAPSKSGEIGLAKEKENRPVRASPQLVRRADSALWRRSFA
DRALAAKSAAPSRRPSTTEGEQVVAVRTGAGDGPNVVKRRTGSVWSWMGDEGSRREEERE
EERKRKEREEQERAERLKQEKEAEQEKGKSAAPSAAPAGAAAPINMRTPMSLGTSSTEAP
SPAELYQPSTGSAGPSDAAAPASAVEAQAGSAPHAMEIDFGGADVYPSPAEPGPSASSTV
QPASSAPMSALDAAFSEFDWGDGTFGTSGMGRGGRDEGHERAHDDGGLLGLTDDDFSFFD
APTPAPGSSALATSIGLSITAPASTVVGDPSFSALPNVAGIDAGFDLFSVAPTHFPAAAP
TSLPFTSDGVFGSGTSPHFLQQSPATTFPFEALDSLTPNALGLAAPSPHAPTPSATILEP
LAHLPSAVHDVSTATPVSTTSTAVISYSPLLAQGAATFAPTQQGLSSLGQLDSFQPLAFA
TSLSSDDKYDPRKGKFGLPSPDSDNEGRAARLVETEEDQLRHWYQAVCDPRYVVAQRLRR
PKLTAKPSESAARPWTRRLSANPFVSVAVDGATPASLMLEPADVDLADADSDSEDAMDVH
GGDGDTRSTDSGVEDGDLTMEDESLTSSCHTALLVDRGAVRHKKRLAKETTRYAPLAAAD
SARELIYAIIAEQVVINSEFREPVKLASAKDAGLVSLDSIATVTRSLGTICASLGPSPLF
DDQAALPALSETPSVTFQLRIQRCIASTTWTAVDFWRPMGFEPLTGAKDVTAFAVFEDGG
AEVRASVEEWAKLMSAAYQGLRLGEHVMGSKSTEQAMPGGLFALSPGALSDSHSREEFKV
LYSALLETAKTSTNTVVYLVLPPGESPLAPKSPLAGILHQIGKSRSTVVNMVACPVSLSS
ITRCTSPAPDEPVPSRLLRLALNVYDQLQVPIERLRLPAPETFPSARPPPIAPLGPAVRL
FQAPAFSIAPPKPHKVDFVLAWPSPSLEVEQRHRILHIAYASRPMTSGDGEWLVITIIDE
RGEIWRVSPRVLKLPNGAVADVHRARVVWTLLKGMIDCADVEWRIVICKVGEPSSVEAKA
WDSILREVSTGSRRQMHVSFVCVELAPSIALDLSNPIVSRPATSSTVISEDGELTFIGAR
DSVPDKSPIFDQSSSTLTFTPREPVALSDGTLVAPASTYVFSVPRFSTADHSSAPAPSGP
SSPAVSAYALHFLLSHRTRNSSYAATLKSLLSDVTRSFVELAALGQARFGTSGRMSWHIE
AARQALAIIE