Protein Info for mRNA_79 in Rhodosporidium toruloides IFO0880

Name: 8447
Annotation: K04906 KCNH3 potassium voltage-gated channel Eag-related subfamily H member 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 598 PF13426: PAS_9" amino acids 229 to 323 (95 residues), 60 bits, see alignment E=3.7e-20 TIGR00229: PAS domain S-box protein" amino acids 233 to 327 (95 residues), 32.2 bits, see alignment E=5.2e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (598 amino acids)

>mRNA_79 K04906 KCNH3 potassium voltage-gated channel Eag-related subfamily H member 3 (Rhodosporidium toruloides IFO0880)
MAAAAVLKARDDIRRPAEAISPTPRRRADAADWAPLSRRTLSAQLTHLPAVPEHSTSKTS
HPNPTPLRSSIAFSLSRLLSPTTFAQYISSSGGFETFQDYLTVFSSPYLASLHLWRDLHQ
LRCLTAEASAGARGVRDVFLTPGAEREVDLENVELRKAVLGLRKIIDTRNAVDQTSQKLL
DRLYASEFEAFVKHRLLSHAKQHLEKRKLGADSVPGLGESFVLSNPRLHDCPIVLASPAF
CTLTGYSREEIVGRNCRFLQGEATAPTDVSAIRTAIAEHKPITQLLLNYDKAGNPFFNLL
CILPLFDPSGDLAYFVGGQTNITGALTASSGLSLLSSRQDTFDADSISHLSLDAAESAGE
WLPPVDLSKFSPGVQSAGARPAPPSRTTSETSTVSGDVTPPLEPASSPPLPANTDDEAAK
STKSKPSLFTSPSLSNVFKFGGSKHAHRRSSSFTEAMENHKSPKMTVREGTVERRIDEFA
TTYEKVCVFRAEGRRIQHVSSAFLRFCGLPASTSSEMNDFPLLGLDLLDLIKADSTTSTT
DLRKAIKRSVEEGKPASLACGVKVPVKSGSMPTATGVLHLSPMQDYAGKVIAYIAIFA