Protein Info for mRNA_97 in Rhodosporidium toruloides IFO0880

Name: 8465
Annotation: KOG2234 Predicted UDP-galactose transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1029 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 43 to 63 (21 residues), see Phobius details amino acids 220 to 240 (21 residues), see Phobius details amino acids 248 to 269 (22 residues), see Phobius details amino acids 276 to 297 (22 residues), see Phobius details amino acids 317 to 338 (22 residues), see Phobius details amino acids 372 to 390 (19 residues), see Phobius details amino acids 433 to 452 (20 residues), see Phobius details amino acids 461 to 479 (19 residues), see Phobius details amino acids 485 to 503 (19 residues), see Phobius details amino acids 526 to 544 (19 residues), see Phobius details PF04142: Nuc_sug_transp" amino acids 209 to 501 (293 residues), 213.9 bits, see alignment E=3.4e-67 TIGR00803: UDP-galactose transporter" amino acids 223 to 345 (123 residues), 79.3 bits, see alignment E=1.7e-26 PF03016: Exostosin" amino acids 623 to 913 (291 residues), 67.5 bits, see alignment E=1.2e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1029 amino acids)

>mRNA_97 KOG2234 Predicted UDP-galactose transporter (Rhodosporidium toruloides IFO0880)
MSGSILSPRSLSLAAVCFQSTALAIVLHVSQANLKPGQAQYKAASAVLLTELGKLVFSLL
LALRDTLKERATLLAPRHNLPSPELYIQNEPKDEKELWRDDPYDTSRGDSAREPLMGSRN
QLRRRSSVTRPPSLAITFDNGPLSPNTAKFPERASFANFQWPTKPISGVVAEKLEKISME
GVSAKPDPQVMRLLDDPMMWVRRRRLGIARMLLEDIFGGDWWKMAVPAVLFAVQNNLIYV
AARNLSVPVFQITFQLKTLITAICAVVMLGRRLGALQWVSLVTLGLGVATMQLGAIQARA
KDGHGHQAKASPESMNYVAGVTAVLVSCFSSAFAATYFELVLKRKPVVPPVEEALLVAPP
TIKPASLWVRNIQLSLFSAVIGLFVVFFQANDVHIHAVGGLSLDFKGLFDPLEHWYDPVV
RAGSGFLEGFTPLVWTVIFLQTVGGLCIAVAIKYADNVAKGFALSVSIVFTFLLSVILFN
FQLSIPSVVGGLAVVLSTIIFEVSPKDIRQLFETDAYGNKKPLLRRWHGLLLLLLGTTFA
AALLPSRQFPLPNAWELVKEKHEKHINLHHQPTVAVADMRHINKLMVKAAGVCGWGTRPH
RETTKSAFGPAHPVSSDYPYWVANTDQYALDDILTTKFATYAKTVPLLSTPAPDFIFLPL
LSQMWSNPWGCQAPELKEAIERTAQYVRDLAASVGKTDYPRIVLPIATIRSNLESVFTTE
LMEELRDSVVFVSIENAPKNVREGMKYTIDVPYPTAFHLSKLADGQKTDVGNYFLDAERP
YLLHYAASATHPWGLPASDPFNGFALRAVLHKEFKSYVDSPPLNASSQILFDDIKLSVDG
AQNLTLFHEHMASATFCPMPAGDSPTRRAFYEAIQLGCIPVIFREKSFGRLLPSSPEIND
LTKYTVFVDETEMINGVGPSLIERLQAISPVDVRRKQQHLQRIAHKMQYSIDEEDEQWLE
AASTTPAPAGVTKYNRTLELEKEARHPVSLDAFGMILKELRTIKEGKWVPGVAKDLRTGM
KTFGRPGRR