Protein Info for mRNA_99 in Rhodosporidium toruloides IFO0880

Name: 8467
Annotation: HMMPfam-Fungal cellulose binding domain-PF00734,HMMPfam-GlcNAc-PI de-N-acetylase-PF02585,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-Coagulation factors 5/8 type C domain (FA58C) profile.-PS50022,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF102588,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF57180

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1563 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 1540 to 1561 (22 residues), see Phobius details PF02585: PIG-L" amino acids 93 to 271 (179 residues), 35.5 bits, see alignment E=2.2e-12 PF00734: CBM_1" amino acids 1200 to 1228 (29 residues), 40.4 bits, see alignment (E = 3.3e-14) amino acids 1261 to 1289 (29 residues), 34 bits, see alignment (E = 3.4e-12)

Best Hits

Predicted SEED Role

"Ammonium transporter" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1563 amino acids)

>mRNA_99 HMMPfam-Fungal cellulose binding domain-PF00734,HMMPfam-GlcNAc-PI de-N-acetylase-PF02585,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-Coagulation factors 5/8 type C domain (FA58C) profile.-PS50022,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF102588,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF57180 (Rhodosporidium toruloides IFO0880)
MRSFYHLSALVASLALLSAPLTLAQNTNATTKAASGAAGAPSNTGAAAGAASTNAASSAA
QGNSTSAAASANGQSSGGGATIFNCAGGVVAGIAHPDDDLLFQSPDLLATVQGGACYTLV
IATMGDAGSTGEAYALSREQGNAAAYAQMAGVPNVWTGVNATIANQQILVTTLVGAPQIQ
RVHFRLPDGNMDGSGFAATGYQSLRALYFGSISQIATQPKTGHFTLVSLNGAINAIIAMR
KPVEIRTLDYMSDYDAGDHADHLTIARLWAAAGGNHGVPVNGYMGYPVQNLAPTLGLNDG
AFISKTNAFFSYTPYDYQECTSFSNCLNTGRGEAYWLLRQYIVTEDLAEQSYTGSAEAPV
TLPNGTNLALQATATASSQSDIQPASAAIDGNVQGYPGNYSAEWSTAGEKTGAWLLLSWP
QPVNLTSLALYDRPNQNDWLQGGTLLFRDGSTISFGALANDGSATLVTLPGSVVTDAVMM
TVTSVSPATGSIGLAEIQAYGNVCPGCTIGSNFQNSSATTQTSTGLVSGTGAYEDLALSA
EAFASSAFAQQGPEKAIDGVISGYPANSSAEWASYNEGVGAWLNITWPAYYLVDSLIFHD
RPNSDDQITSAHIDLSDGTGYDIGALNNDGSAVVFNLSTPLNISSLKLTVTGVSGTTSSV
GLSEIEAYYSQPQTPVNLTAVSRNPGVAAPVVGDLDNESWDDDLALQNCTATASSSAPGQ
DASLAINGVVNGYKEDGTGDWTQEWATVSQGAGAWINLTWPYSVKISQIGLADRPNLNDQ
ITGAVLQFDDGSYVSTGTLYNDGTLTNISIPGIITTSIQLTVTAVSSTTSSIGLSEFAVF
GSLVAANGTILPNATDTSNPALTNSTLPINGTLPLNGTLPLNGTLPLNGTYPLNGTLPLN
GTFPLNGTLPLNGTYPLNGTLPLSGTLPLNGTLPLNGTLPLNGTLPLNGTLPLYGTLPLN
GTLPLNGTYALNGTLPLNGTLPLNGTLPLNGTLPLNGTLPLNGTLPLNATLPLNATLPLN
ATLPLNSTSTLNGALSLNGTLAGNASSIFLPNATISSLYNLSSLLPSATASANISASLNR
SSAPVSTAYNSSAVFPSATGLNASNLLPSITANLSSVLPSATANASSSLFNLTVSTAVAT
ASRNASSASSATSTTASSSYLSSSASANASSVSRSSSAVSSTLSSSAAAPSATCAGSAVA
YGQCGGSGYVGPTCCPSGFDCTFQNPYYSQCVQSSSSVAPSSTLTAGAVVPTAGCTGTVP
AYYQCGGSGYIGSTCCQTGYVCQVQNPYYYQCVASSAVSTSASPASSSLVSPSASSASSV
RSSSSMASSTASSVASSAVLSKSAVSSTVTSAPSAPPSSSSMVTVTRSSSATSSSTSSSA
TAAPTLAAQASTVNIARLAGVKLSASSSISASPPTGINDGSYGGLTALGLGSSKNEWVSS
GTTKQWIQIDFPAATLIRDIVIFPRVNSWQTVTSMALNFTTGDVVTASGSISSSGSHVSL
GAGLVTSGVRVTITGVGFTTTRAGFAEIEVYNRAPPTTGLLGTLGNAVGSTLSGILGLLG
LRA