Protein Info for mRNA_106 in Rhodosporidium toruloides IFO0880

Name: 8474
Annotation: K15201 GTP3C3, TFC4 general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 PF13181: TPR_8" amino acids 247 to 267 (21 residues), 12 bits, see alignment (E = 0.00014) amino acids 546 to 575 (30 residues), 11.9 bits, see alignment (E = 0.00016) PF13174: TPR_6" amino acids 547 to 576 (30 residues), 17.5 bits, see alignment (E = 3.4e-06) PF13432: TPR_16" amino acids 555 to 605 (51 residues), 28.2 bits, see alignment 1.6e-09 PF14559: TPR_19" amino acids 556 to 608 (53 residues), 37.2 bits, see alignment 2.2e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1100 amino acids)

>mRNA_106 K15201 GTP3C3, TFC4 general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) (Rhodosporidium toruloides IFO0880)
MDDLFPELQGFTPRASTSQAHAFALDPALAGPGPSSSAARARRSQGGAYWDEEEEDLYGD
DSDETGESEDETDAEEEYAAATQQQAGGVKRPRKSQGGLLADDGTVVTPSGSAKGKGKAT
DQDLFALDGEEGGDEELGRLISAIRDSNSTGVGGATALDREFDRSIADELDAFDPDLMED
LTVGVKGRRRKRKGKTAGRRAAGDIEPSPEVKRLLGQANAAYAEGRLQEAIELLSEVVRI
DPIIRVSWYTLATIYEELGEREKAVQCKIVATHLLGKKEASSEWGDLGRECRDVGLLHQA
IYCFTQAIKVDKDDVDAMWDRATLLKLSGATNMAIKAFFALLTLLPHDPGVLRELAPMLA
ATHQFAKASSILLSAFAYYRSLVPHVNRDTVNYLATYGYGDLETLADFLNVQRNWAESVR
VIRQGVRWLQGRESETGWDTLEDDREYDEERKIRGGWEKGNTWFEDEPTYELDVRLRSRL
GLARLGMGWVEEAARHFDIVLAEDVAQFPELFGAIGEAYYERKMYNEAIDVYMLMAENEE
TNGPAVWLKVGQCRQAMGDFEEARDCFENIVEEEPGNAEAKLALAKCLEQLGDPSRALTL
IKEVIASRGERADSSTTEGARKRRVHRTKEERAAQKSDREAIERERNAEFTMAFLRLQEL
EGAIEAGDEEAMNQWIEIATGLVDSFRSTKQLFPSDPRKRFTGMIRTHRRKGKRDLEAEA
DQLADRLQRSIIAEEDNEVEETSFRGLDFDGWVDFILRYCFMLAKTDDIELAAEVLLHVR
EAGVFRQSEARQESLRLGLIACYAHAGMHEQAAQELRYFFHGQPFSNEPVRLLLMLLSKG
ESAIEAFNLPKQQKFFIRQLKGVQLAATGDQGQDEDGTAGRASSPVVAKKPVRKGKGKER
AIEPPAAEDEQAADDDGEDERPAGQASSAFTPTKLNPVFLTTYGLMMNVSQSHQPAIIYL
LRAYKLDEKQPLVNLALATAYLQRAMGRKTDNRQHQIAQAFAFLQQYRKLRGSCQEAEFN
LARAFHHLGMHAHAVKHYQKLLESAAAQAEQRMAIDDEDGAAKSQKDDLVKVAAYNLVTL
YAMANAPELARIVAQKWLAV