Protein Info for mRNA_107 in Rhodosporidium toruloides IFO0880

Name: 8475
Annotation: K08592 SENP1 sentrin-specific protease 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 PF02902: Peptidase_C48" amino acids 18 to 189 (172 residues), 110.9 bits, see alignment E=4.3e-36

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (200 amino acids)

>mRNA_107 K08592 SENP1 sentrin-specific protease 1 (Rhodosporidium toruloides IFO0880)
MKGGSAAHRDIIRLEKRTWLNDEIVNFYGAMINARSDEADKREAKEGPKARGEGVKRLRK
AFCFNTHFWNMFGDHGFSRVKRWTKRFDTFEKDIIIVPINHNNSHWVCAAVNIALKRFEY
YDSLGNPSAFVYDRLRRWLAEEHKSKKGGKEIDLSEWENFWMEDLPLQANADDCGVFTCM
FMESLSRDVDGFDFEQKNMP